G198540


Basic Information

Item Value
gene id G198540
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 19246972 ~ 19247396 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269618
tcacctctccatccaggctgtcatattgtgaagtttgcggacgacacggcagtggttggatgcatcacgaacagagatgagtccagctacaggcaggaggtggaacacctggaggattggtgcagagaaaacaacctctgcatcaatgtaaaaaagacaaaggagatgattgtggacttcagaaggggcaagcatgcccacctccccctgcacattggaggatctgcggtggaagtggttgacagctacaggtacttgggtgtgcacatcagaaaggcacatcagcggctctacttcctcaggaggctgagacgagctggactcgggagcgcagtcctcacctccttctacagatgtgtggtggagagagtcgtgtgctccagcatcaatgtgtggcatggaagctgcactgctgcagacaggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269618 True 425 TUCP 0.54 1 19246972 19247396

Neighbor

gene id symbol gene type direction distance location
LOC103043003 agr2,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756,LOC107709281 coding upstream 118940 19125280 ~ 19128032 (+)
abcf1 abcf1,LOC107745711 coding upstream 146154 19079085 ~ 19100818 (+)
bag6 bag6,bag6l coding upstream 179264 19047940 ~ 19067708 (+)
tmem64 tmem64,LOC107696193,LOC107584320 coding upstream 235505 18999374 ~ 19011467 (+)
pip4p2 tmem55a,LOC107724355,LOC107696196,LOC107702130 coding upstream 322651 18906586 ~ 18924321 (+)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 392271 19639667 ~ 19659293 (+)
txlna txlna,LOC108433836,LOC107709285,LOC107687085,LOC107562872,LOC107576061 coding downstream 413050 19660446 ~ 19671216 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding downstream 427730 19675126 ~ 19681146 (+)
srfbp1 NA coding downstream 890399 20137795 ~ 20142905 (+)
LOC103022559 LOC108433845 coding downstream 896499 20143895 ~ 20155470 (+)
G198537 NA non-coding upstream 34644 19211995 ~ 19212328 (+)
G198468 NA non-coding upstream 173356 19072800 ~ 19073616 (+)
G198378 thsd7a,LOC108410784,LOC104968073,LOC103477695 non-coding upstream 594178 18651980 ~ 18652794 (+)
LOC111195524 NA non-coding upstream 624061 18610759 ~ 18622911 (+)
G198374 NA non-coding upstream 636887 18609564 ~ 18610085 (+)
G198584 NA non-coding downstream 223963 19471359 ~ 19471750 (+)
G198588 NA non-coding downstream 239544 19486940 ~ 19490316 (+)
G198603 NA non-coding downstream 435305 19682701 ~ 19719993 (+)
G198604 NA non-coding downstream 449107 19696503 ~ 19699096 (+)
G198635 NA non-coding downstream 549904 19797300 ~ 19797528 (+)
G198535 NA other upstream 41314 19205077 ~ 19205658 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other upstream 64494 19166346 ~ 19182478 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other upstream 130670 19104407 ~ 19116302 (+)
G198400 NA other upstream 355358 18887469 ~ 18891614 (+)
G198397 NA other upstream 383606 18858532 ~ 18863366 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other downstream 805632 20053028 ~ 20088987 (+)
mrpl36 mrpl36 other downstream 1025625 20273021 ~ 20274854 (+)
G198815 NA other downstream 1554975 20802371 ~ 20802890 (+)
LOC103037930 NA other downstream 2111068 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 2971869 22219265 ~ 22223036 (+)

Expression


Co-expression Network