G198588


Basic Information

Item Value
gene id G198588
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 19486940 ~ 19490316 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269669
TGTCAGGCTGGGGTGCAGGGTAGACGAGGAGGCGGGCGCAAATTGCAAACAACAggggatttattaacaaaaatacaaaataaacatggaatTGACTGAAAACAGGACTGGGGAAACTcgggaaaacatggaacactgacagacgaaaaacgtacaaggatcgacaccggggaaatgaaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacagaagaacacaggtgagtggaaaaacacaggtagAACACAGGgtcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacactat
>TU269670
TGTCAGGCTGGGGTGCAGGGTAGACGAGGAGGCGGGCGCAAATTGCAAACAACAggggatttattaacaaaaatacaaaataaacatggaatTGACTGAAAACAGGACTGGGGAAACTcgggaaaacatggaacactgacagacgaaaaacgtacaaggatcgacaccggggaaatgaaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacagaagaacacaggtgagtggaaaaacacaggtagAACACAGGgtcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacactat
>TU269671
TGTCAGGCTGGGGTGCAGGGTAGACGAGGAGGCGGGCGCAAATTGCAAACAACAggggatttattaacaaaaatacaaaataaacatggaatTGACTGAAAACAGGACTGGGGAAACTcgggaaaacatggaacactgacagacgaaaaacgtacaaggatcgacaccggggaaatgaaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacagaagaacacaggtgagtggaaaaacacaggtagAACACAGGgtcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacactat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269669 True 359 lncRNA 0.49 2 19486940 19490316
TU269670 False 359 lncRNA 0.49 2 19486940 19490316
TU269671 False 359 lncRNA 0.49 2 19486940 19490316

Neighbor

gene id symbol gene type direction distance location
LOC103043003 agr2,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756,LOC107709281 coding upstream 358908 19125280 ~ 19128032 (+)
abcf1 abcf1,LOC107745711 coding upstream 386122 19079085 ~ 19100818 (+)
bag6 bag6,bag6l coding upstream 419232 19047940 ~ 19067708 (+)
tmem64 tmem64,LOC107696193,LOC107584320 coding upstream 475473 18999374 ~ 19011467 (+)
pip4p2 tmem55a,LOC107724355,LOC107696196,LOC107702130 coding upstream 562619 18906586 ~ 18924321 (+)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 149351 19639667 ~ 19659293 (+)
txlna txlna,LOC108433836,LOC107709285,LOC107687085,LOC107562872,LOC107576061 coding downstream 170130 19660446 ~ 19671216 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding downstream 184810 19675126 ~ 19681146 (+)
srfbp1 NA coding downstream 647479 20137795 ~ 20142905 (+)
LOC103022559 LOC108433845 coding downstream 653579 20143895 ~ 20155470 (+)
G198584 NA non-coding upstream 15190 19471359 ~ 19471750 (+)
G198537 NA non-coding upstream 274612 19211995 ~ 19212328 (+)
G198468 NA non-coding upstream 413324 19072800 ~ 19073616 (+)
G198378 thsd7a,LOC108410784,LOC104968073,LOC103477695 non-coding upstream 834146 18651980 ~ 18652794 (+)
LOC111195524 NA non-coding upstream 864029 18610759 ~ 18622911 (+)
G198603 NA non-coding downstream 192385 19682701 ~ 19719993 (+)
G198604 NA non-coding downstream 206187 19696503 ~ 19699096 (+)
G198635 NA non-coding downstream 306984 19797300 ~ 19797528 (+)
G198637 NA non-coding downstream 319593 19809909 ~ 19810452 (+)
G198638 NA non-coding downstream 320676 19810992 ~ 19811494 (+)
G198540 NA other upstream 239544 19246972 ~ 19247396 (+)
G198535 NA other upstream 281282 19205077 ~ 19205658 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other upstream 304462 19166346 ~ 19182478 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other upstream 370638 19104407 ~ 19116302 (+)
G198400 NA other upstream 595326 18887469 ~ 18891614 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other downstream 562712 20053028 ~ 20088987 (+)
mrpl36 mrpl36 other downstream 782705 20273021 ~ 20274854 (+)
G198815 NA other downstream 1312055 20802371 ~ 20802890 (+)
LOC103037930 NA other downstream 1868148 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 2728949 22219265 ~ 22223036 (+)

Expression


Co-expression Network