G198640


Basic Information

Item Value
gene id G198640
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 19813701 ~ 19813922 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269744
ACCAGATAGAGGAGATTGTTTTGGTGTTTGTAAGAGTTTGGTGCTACTTATcttatgttatttatttgtgcagcaagagttattttaaatattcttttgGAATATCTTGCTGAATCTAAAAGCCAGAGCTTTTCTTCATGTATCAGTTCCAGGTCTAAGAGCAACAGCCATCATCTGAGAGCAGTATGAAATAAAAGATCAGGAAAACCACTAGGAagaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269744 True 222 lncRNA 0.35 1 19813701 19813922

Neighbor

gene id symbol gene type direction distance location
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 132555 19675126 ~ 19681146 (+)
txlna txlna,LOC108433836,LOC107709285,LOC107687085,LOC107562872,LOC107576061 coding upstream 142485 19660446 ~ 19671216 (+)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 154408 19639667 ~ 19659293 (+)
LOC103043003 agr2,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756,LOC107709281 coding upstream 685669 19125280 ~ 19128032 (+)
abcf1 abcf1,LOC107745711 coding upstream 712883 19079085 ~ 19100818 (+)
srfbp1 NA coding downstream 323873 20137795 ~ 20142905 (+)
LOC103022559 LOC108433845 coding downstream 329973 20143895 ~ 20155470 (+)
LOC103030452 irx4 coding downstream 435278 20249200 ~ 20254780 (+)
lpcat1 lpcat1,LOC107754844,LOC107694330 coding downstream 462709 20276631 ~ 20313981 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding downstream 1516083 21330005 ~ 21351097 (+)
G198638 NA non-coding upstream 2207 19810992 ~ 19811494 (+)
G198637 NA non-coding upstream 3249 19809909 ~ 19810452 (+)
G198635 NA non-coding upstream 16173 19797300 ~ 19797528 (+)
G198603 NA non-coding upstream 93708 19682701 ~ 19719993 (+)
G198604 NA non-coding upstream 114605 19696503 ~ 19699096 (+)
G198658 NA non-coding downstream 142420 19956342 ~ 19956586 (+)
G198661 NA non-coding downstream 161831 19975753 ~ 19976057 (+)
G198664 NA non-coding downstream 167761 19981683 ~ 19982250 (+)
LOC111195527 NA non-coding downstream 358034 20171956 ~ 20172807 (+)
G198727 NA non-coding downstream 408124 20222046 ~ 20222287 (+)
G198540 NA other upstream 566305 19246972 ~ 19247396 (+)
G198535 NA other upstream 608043 19205077 ~ 19205658 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other upstream 631223 19166346 ~ 19182478 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other upstream 697399 19104407 ~ 19116302 (+)
G198400 NA other upstream 922087 18887469 ~ 18891614 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other downstream 239106 20053028 ~ 20088987 (+)
mrpl36 mrpl36 other downstream 459099 20273021 ~ 20274854 (+)
G198815 NA other downstream 988449 20802371 ~ 20802890 (+)
LOC103037930 NA other downstream 1544542 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 2405343 22219265 ~ 22223036 (+)

Expression


Co-expression Network