G198661


Basic Information

Item Value
gene id G198661
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 19975753 ~ 19976057 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269765
tatttcactttcaaacattaacaatattactcaagtggttattaaacgtttcatttcatatacgtgtagagttaataattcaaggaaactgatgaaaaatcatttacatttacgccctttacattttagtcgactaaatttactgtaattttagtagactatattcttatgacattaagttgactaaaactaaaaacatttcagatgactaaattgtgactaaaactaaatactattttcgtcacaagactataactaagactaaatcaaaatttgttgtcaaaattaacactggtggcaaacct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269765 True 305 lncRNA 0.27 1 19975753 19976057

Neighbor

gene id symbol gene type direction distance location
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 294607 19675126 ~ 19681146 (+)
txlna txlna,LOC108433836,LOC107709285,LOC107687085,LOC107562872,LOC107576061 coding upstream 304537 19660446 ~ 19671216 (+)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 316460 19639667 ~ 19659293 (+)
LOC103043003 agr2,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756,LOC107709281 coding upstream 847721 19125280 ~ 19128032 (+)
abcf1 abcf1,LOC107745711 coding upstream 874935 19079085 ~ 19100818 (+)
srfbp1 NA coding downstream 161738 20137795 ~ 20142905 (+)
LOC103022559 LOC108433845 coding downstream 167838 20143895 ~ 20155470 (+)
LOC103030452 irx4 coding downstream 273143 20249200 ~ 20254780 (+)
lpcat1 lpcat1,LOC107754844,LOC107694330 coding downstream 300574 20276631 ~ 20313981 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding downstream 1353948 21330005 ~ 21351097 (+)
G198658 NA non-coding upstream 19167 19956342 ~ 19956586 (+)
G198640 NA non-coding upstream 161831 19813701 ~ 19813922 (+)
G198638 NA non-coding upstream 164259 19810992 ~ 19811494 (+)
G198637 NA non-coding upstream 165301 19809909 ~ 19810452 (+)
G198635 NA non-coding upstream 178225 19797300 ~ 19797528 (+)
G198664 NA non-coding downstream 5626 19981683 ~ 19982250 (+)
LOC111195527 NA non-coding downstream 195899 20171956 ~ 20172807 (+)
G198727 NA non-coding downstream 245989 20222046 ~ 20222287 (+)
G198730 ndufs6 non-coding downstream 292632 20268689 ~ 20271980 (+)
G198754 NA non-coding downstream 367862 20343919 ~ 20344324 (+)
G198540 NA other upstream 728357 19246972 ~ 19247396 (+)
G198535 NA other upstream 770095 19205077 ~ 19205658 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other upstream 793275 19166346 ~ 19182478 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other upstream 859451 19104407 ~ 19116302 (+)
G198400 NA other upstream 1084139 18887469 ~ 18891614 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other downstream 76971 20053028 ~ 20088987 (+)
mrpl36 mrpl36 other downstream 296964 20273021 ~ 20274854 (+)
G198815 NA other downstream 826314 20802371 ~ 20802890 (+)
LOC103037930 NA other downstream 1382407 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 2243208 22219265 ~ 22223036 (+)

Expression


Co-expression Network