G198754


Basic Information

Item Value
gene id G198754
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20343919 ~ 20344324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269886
TAGGAGGGCGCAGGCCTCCGCCTCTTGTCTGCGTGACGCTTCTGCATCGCCCAGGCAGACAAAAGGGCGGCCCGAGCCCTTCTCCAAGCCCGGCGACAACGGTTAACCGTCTGGTCGGCTGAAGGCACCCCCGTTACCGTCTCCTGTCCGGGGAAGGCAGGCGGAGCATAACCGAACTGGCACTCGAAGGGTGACATCCCTAAGGACGAGTGCCAGAGTGTATTATGGGCATACTCCACCCACCTCAGTTGGTCTGACCAGGTAGACGGGGCCGCCAACGCCAGACAGCGGAGGGTCCGTTCCAGATCCTGGTTgaccctctctgtctgtccgtTGGACTGGGGGTAGAACCCCGAGGACAGACTGACCTCAGCCCCCAGTAAGCGGCAAAAGGCCCCCCAGAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269886 True 406 lncRNA 0.63 1 20343919 20344324

Neighbor

gene id symbol gene type direction distance location
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 29938 20276631 ~ 20313981 (+)
LOC103030452 irx4 coding upstream 89139 20249200 ~ 20254780 (+)
LOC103022559 LOC108433845 coding upstream 188449 20143895 ~ 20155470 (+)
srfbp1 NA coding upstream 201014 20137795 ~ 20142905 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 662773 19675126 ~ 19681146 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding downstream 985681 21330005 ~ 21351097 (+)
LOC107197622 LOC107197622 coding downstream 1007238 21351562 ~ 21356335 (+)
otud6b otud6b,LOC107556329 coding downstream 1045814 21390138 ~ 21395528 (+)
lrrc69 NA coding downstream 1057165 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 1516254 21860578 ~ 21872452 (+)
G198730 ndufs6 non-coding upstream 71939 20268689 ~ 20271980 (+)
G198727 NA non-coding upstream 121632 20222046 ~ 20222287 (+)
LOC111195527 NA non-coding upstream 171112 20171956 ~ 20172807 (+)
G198664 NA non-coding upstream 361669 19981683 ~ 19982250 (+)
G198661 NA non-coding upstream 367862 19975753 ~ 19976057 (+)
G198755 NA non-coding downstream 2987 20347311 ~ 20347588 (+)
G198767 NA non-coding downstream 241400 20585724 ~ 20586099 (+)
G198777 NA non-coding downstream 374554 20718878 ~ 20719619 (+)
G198776 NA non-coding downstream 406376 20750700 ~ 20760029 (+)
G198820 NA non-coding downstream 470817 20815141 ~ 20815571 (+)
mrpl36 mrpl36 other upstream 69065 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 254932 20053028 ~ 20088987 (+)
G198540 NA other upstream 1096523 19246972 ~ 19247396 (+)
G198535 NA other upstream 1138261 19205077 ~ 19205658 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other upstream 1161441 19166346 ~ 19182478 (+)
G198815 NA other downstream 458047 20802371 ~ 20802890 (+)
LOC103037930 NA other downstream 1014140 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 1874941 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 2485907 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 5273604 25617928 ~ 25620135 (+)

Expression


Co-expression Network