G198820


Basic Information

Item Value
gene id G198820
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20815141 ~ 20815571 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269962
tgagtggtccagcggtctaaagcgctgccactatgagcaggaggtcgcaggttcgaacccccgctcatgcagctttgccatcaagctgccggcgctcagagggagcacaattggccctgctccccccaggtgggtagatggcactctctccccacatcactcctagggtgatgtctgcagcacagggcgtctgtgagctgcatcagcagcagctcgaaaagaagcggtggctggcttcacatgtatcagaggaggcatgtgttagtcttcaccctcctggtgtgttggggcatcactagtgatagggggagtcctaatgagtgggttgggtaattggggagaaaatggggaaaaattagaaataaaattat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269962 True 371 lncRNA 0.55 2 20815141 20815571

Neighbor

gene id symbol gene type direction distance location
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 501160 20276631 ~ 20313981 (+)
LOC103030452 irx4 coding upstream 560361 20249200 ~ 20254780 (+)
LOC103022559 LOC108433845 coding upstream 659671 20143895 ~ 20155470 (+)
srfbp1 NA coding upstream 672236 20137795 ~ 20142905 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 1133995 19675126 ~ 19681146 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding downstream 514434 21330005 ~ 21351097 (+)
LOC107197622 LOC107197622 coding downstream 535991 21351562 ~ 21356335 (+)
otud6b otud6b,LOC107556329 coding downstream 574567 21390138 ~ 21395528 (+)
lrrc69 NA coding downstream 585918 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 1045007 21860578 ~ 21872452 (+)
G198776 NA non-coding upstream 55112 20750700 ~ 20760029 (+)
G198777 NA non-coding upstream 95522 20718878 ~ 20719619 (+)
G198767 NA non-coding upstream 229042 20585724 ~ 20586099 (+)
G198755 NA non-coding upstream 467553 20347311 ~ 20347588 (+)
G198754 NA non-coding upstream 470817 20343919 ~ 20344324 (+)
G198830 NA non-coding downstream 115647 20931218 ~ 20931524 (+)
G198839 NA non-coding downstream 231021 21046592 ~ 21046889 (+)
G198842 NA non-coding downstream 244429 21060000 ~ 21060212 (+)
G198848 NA non-coding downstream 275185 21090756 ~ 21091031 (+)
G198881 NA non-coding downstream 583161 21398732 ~ 21399000 (+)
G198815 NA other upstream 12251 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 540287 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 726154 20053028 ~ 20088987 (+)
G198540 NA other upstream 1567745 19246972 ~ 19247396 (+)
G198535 NA other upstream 1609483 19205077 ~ 19205658 (+)
LOC103037930 NA other downstream 542893 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 1403694 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 2014660 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 4802357 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 5770668 26586239 ~ 26613188 (+)

Expression


Co-expression Network