G198830


Basic Information

Item Value
gene id G198830
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20931218 ~ 20931524 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269973
aaacgaatctcgctggttatccgtcctcttccacgccacagtaacttttggaacttctgaatatgctgccatgttttttttttaagttcggttcaatttaaatgtattagtttggttccgaaactgaaatgtaaagaatttaacttggatcaaggtgaataattaatattgggtcgagtgaagtaatatggtttatgtcaaaataaaataatcaggttgtaacaattgactttatttagattgagtgaagtcaaatagtttagatgcaacaaatggacatcaatttttttaatttgagcagggctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269973 True 307 lncRNA 0.32 1 20931218 20931524

Neighbor

gene id symbol gene type direction distance location
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 617237 20276631 ~ 20313981 (+)
LOC103030452 irx4 coding upstream 676438 20249200 ~ 20254780 (+)
LOC103022559 LOC108433845 coding upstream 775748 20143895 ~ 20155470 (+)
srfbp1 NA coding upstream 788313 20137795 ~ 20142905 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 1250072 19675126 ~ 19681146 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding downstream 398481 21330005 ~ 21351097 (+)
LOC107197622 LOC107197622 coding downstream 420038 21351562 ~ 21356335 (+)
otud6b otud6b,LOC107556329 coding downstream 458614 21390138 ~ 21395528 (+)
lrrc69 NA coding downstream 469965 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 929054 21860578 ~ 21872452 (+)
G198820 NA non-coding upstream 115647 20815141 ~ 20815571 (+)
G198776 NA non-coding upstream 171189 20750700 ~ 20760029 (+)
G198777 NA non-coding upstream 211599 20718878 ~ 20719619 (+)
G198767 NA non-coding upstream 345119 20585724 ~ 20586099 (+)
G198755 NA non-coding upstream 583630 20347311 ~ 20347588 (+)
G198839 NA non-coding downstream 115068 21046592 ~ 21046889 (+)
G198842 NA non-coding downstream 128476 21060000 ~ 21060212 (+)
G198848 NA non-coding downstream 159232 21090756 ~ 21091031 (+)
G198881 NA non-coding downstream 467208 21398732 ~ 21399000 (+)
G198939 NA non-coding downstream 629478 21561002 ~ 21561215 (+)
G198815 NA other upstream 128328 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 656364 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 842231 20053028 ~ 20088987 (+)
G198540 NA other upstream 1683822 19246972 ~ 19247396 (+)
G198535 NA other upstream 1725560 19205077 ~ 19205658 (+)
LOC103037930 NA other downstream 426940 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 1287741 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 1898707 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 4686404 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 5654715 26586239 ~ 26613188 (+)

Expression


Co-expression Network