G198842


Basic Information

Item Value
gene id G198842
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21060000 ~ 21060212 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269986
CGCGCGTAGCTCCGCTCGTAGACCgtctgtaagtacagatttttgttgattttgcaggtctagcagggtctgtcggtcgtaagttgttcccatagtgaacttttgcatgattgcgagttcagatcggattatttacacagaaaaacaaacaaaagcaccgtGTTTTGCTTCCGGAGTGGCCGCTGCGACTGCTCGCGCCGCCGACAGGAAGTG

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko00350 Tyrosine metabolism
ko00965 Betalain biosynthesis
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU269986 True 213 lncRNA 0.50 1 21060000 21060212

Neighbor

gene id symbol gene type direction distance location
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 746019 20276631 ~ 20313981 (+)
LOC103030452 irx4 coding upstream 805220 20249200 ~ 20254780 (+)
LOC103022559 LOC108433845 coding upstream 904530 20143895 ~ 20155470 (+)
srfbp1 NA coding upstream 917095 20137795 ~ 20142905 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 1378854 19675126 ~ 19681146 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding downstream 269793 21330005 ~ 21351097 (+)
LOC107197622 LOC107197622 coding downstream 291350 21351562 ~ 21356335 (+)
otud6b otud6b,LOC107556329 coding downstream 329926 21390138 ~ 21395528 (+)
lrrc69 NA coding downstream 341277 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 800366 21860578 ~ 21872452 (+)
G198839 NA non-coding upstream 13111 21046592 ~ 21046889 (+)
G198830 NA non-coding upstream 128476 20931218 ~ 20931524 (+)
G198820 NA non-coding upstream 244429 20815141 ~ 20815571 (+)
G198776 NA non-coding upstream 299971 20750700 ~ 20760029 (+)
G198777 NA non-coding upstream 340381 20718878 ~ 20719619 (+)
G198848 NA non-coding downstream 30544 21090756 ~ 21091031 (+)
G198881 NA non-coding downstream 338520 21398732 ~ 21399000 (+)
G198939 NA non-coding downstream 500790 21561002 ~ 21561215 (+)
G198943 NA non-coding downstream 559426 21619638 ~ 21619845 (+)
G198947 NA non-coding downstream 596204 21656416 ~ 21656764 (+)
G198815 NA other upstream 257110 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 785146 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 971013 20053028 ~ 20088987 (+)
G198540 NA other upstream 1812604 19246972 ~ 19247396 (+)
G198535 NA other upstream 1854342 19205077 ~ 19205658 (+)
LOC103037930 NA other downstream 298252 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 1159053 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 1770019 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 4557716 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 5526027 26586239 ~ 26613188 (+)

Expression


Co-expression Network