G198848


Basic Information

Item Value
gene id G198848
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21090756 ~ 21091031 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269992
tagtaAATTCATCCCTTAGCATGGGCTACGTACCCAATTCTCTTAAATTGGCGGTCATTAAGCCCATTATCAAAAAGCCAAATCTGGACCCCCGCGAGCTTGCTAATTATAGACCAATTTCTAATCTTTCCTTTATAGCCAAAATCctagaaaaaattgtgtttaaccagctgcgcttgtatctacaaagtaatagtatgcatgaggtttttcaatctggatttagacaaaaccatagtactgaaacagctttacttagagtaactaatgatttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269992 True 276 lncRNA 0.36 1 21090756 21091031

Neighbor

gene id symbol gene type direction distance location
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 776775 20276631 ~ 20313981 (+)
LOC103030452 irx4 coding upstream 835976 20249200 ~ 20254780 (+)
LOC103022559 LOC108433845 coding upstream 935286 20143895 ~ 20155470 (+)
srfbp1 NA coding upstream 947851 20137795 ~ 20142905 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 1409610 19675126 ~ 19681146 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding downstream 238974 21330005 ~ 21351097 (+)
LOC107197622 LOC107197622 coding downstream 260531 21351562 ~ 21356335 (+)
otud6b otud6b,LOC107556329 coding downstream 299107 21390138 ~ 21395528 (+)
lrrc69 NA coding downstream 310458 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 769547 21860578 ~ 21872452 (+)
G198842 NA non-coding upstream 30544 21060000 ~ 21060212 (+)
G198839 NA non-coding upstream 43867 21046592 ~ 21046889 (+)
G198830 NA non-coding upstream 159232 20931218 ~ 20931524 (+)
G198820 NA non-coding upstream 275185 20815141 ~ 20815571 (+)
G198776 NA non-coding upstream 330727 20750700 ~ 20760029 (+)
G198881 NA non-coding downstream 307701 21398732 ~ 21399000 (+)
G198939 NA non-coding downstream 469971 21561002 ~ 21561215 (+)
G198943 NA non-coding downstream 528607 21619638 ~ 21619845 (+)
G198947 NA non-coding downstream 565385 21656416 ~ 21656764 (+)
G198965 NA non-coding downstream 714443 21805474 ~ 21805739 (+)
G198815 NA other upstream 287866 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 815902 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 1001769 20053028 ~ 20088987 (+)
G198540 NA other upstream 1843360 19246972 ~ 19247396 (+)
G198535 NA other upstream 1885098 19205077 ~ 19205658 (+)
LOC103037930 NA other downstream 267433 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 1128234 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 1739200 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 4526897 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 5495208 26586239 ~ 26613188 (+)

Expression


Co-expression Network