G198881


Basic Information

Item Value
gene id G198881
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21398732 ~ 21399000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU270035
gacacttggagatgcccaaagggtcATTTGGAAATACCAaaagggacacttggagatgcccaaagggtcacttggagatgcccaaagggtcacttgaagatgcccaaaaggacacttggatatgcccaaaagaacacttggagatgaccAAAGGGTCatttggagatacccaaagggacacttggagatgcccaaagagataattggagatgcccaaagagataattggagatgcccaaagagataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270035 True 248 lncRNA 0.46 2 21398732 21399000

Neighbor

gene id symbol gene type direction distance location
otud6b otud6b,LOC107556329 coding upstream 3204 21390138 ~ 21395528 (+)
LOC107197622 LOC107197622 coding upstream 42397 21351562 ~ 21356335 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding upstream 47635 21330005 ~ 21351097 (+)
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 1084751 20276631 ~ 20313981 (+)
LOC103030452 irx4 coding upstream 1143952 20249200 ~ 20254780 (+)
lrrc69 NA coding downstream 2489 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 461578 21860578 ~ 21872452 (+)
LOC103033932 LOC108424940 coding downstream 532796 21931796 ~ 21944254 (+)
LOC103030765 klhl38a,LOC103030765,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC108272409,LOC105907674 coding downstream 636185 22035185 ~ 22042547 (+)
azin1b azin1b,LOC108425019,LOC108256938 coding downstream 742456 22141456 ~ 22148362 (+)
G198848 NA non-coding upstream 307701 21090756 ~ 21091031 (+)
G198842 NA non-coding upstream 338520 21060000 ~ 21060212 (+)
G198839 NA non-coding upstream 351843 21046592 ~ 21046889 (+)
G198830 NA non-coding upstream 467208 20931218 ~ 20931524 (+)
G198820 NA non-coding upstream 583161 20815141 ~ 20815571 (+)
G198939 NA non-coding downstream 162002 21561002 ~ 21561215 (+)
G198943 NA non-coding downstream 220638 21619638 ~ 21619845 (+)
G198947 NA non-coding downstream 257416 21656416 ~ 21656764 (+)
G198965 NA non-coding downstream 406474 21805474 ~ 21805739 (+)
G198968 NA non-coding downstream 421975 21820975 ~ 21841828 (+)
LOC103037930 NA other upstream 15732 21358464 ~ 21383000 (+)
G198815 NA other upstream 595842 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1123878 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 1309745 20053028 ~ 20088987 (+)
G198540 NA other upstream 2151336 19246972 ~ 19247396 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 820265 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 1431231 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 4218928 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 5187239 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 5432954 26831954 ~ 26892623 (+)

Expression


Co-expression Network