G198947


Basic Information

Item Value
gene id G198947
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21656416 ~ 21656764 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU270113
ttacctttctttaagaaaaatcgctgtatatccagatctgttttaacatcagctgctccgactagctgcctgaactcacagcgacggggggcttccccacgctgaccctcctttgcaagctgattggctgtttctcctgaaaggcgggactttctccttgaaccggctccacgattggttaagagacacagagcggtcagtgccctgtctcctcaataatatatattttttaatcttaatataatacgggaaatttacgggaaaatactaatacgggaggacggcgggaaagaggagtaaaatacggtagtttcccggccaaaacgggagacttgacaggtatgggttA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270113 True 349 lncRNA 0.46 1 21656416 21656764

Neighbor

gene id symbol gene type direction distance location
lrrc69 NA coding upstream 250227 21401489 ~ 21406189 (+)
otud6b otud6b,LOC107556329 coding upstream 260888 21390138 ~ 21395528 (+)
LOC107197622 LOC107197622 coding upstream 300081 21351562 ~ 21356335 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding upstream 305319 21330005 ~ 21351097 (+)
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 1342435 20276631 ~ 20313981 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 203814 21860578 ~ 21872452 (+)
LOC103033932 LOC108424940 coding downstream 275032 21931796 ~ 21944254 (+)
LOC103030765 klhl38a,LOC103030765,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC108272409,LOC105907674 coding downstream 378421 22035185 ~ 22042547 (+)
azin1b azin1b,LOC108425019,LOC108256938 coding downstream 484692 22141456 ~ 22148362 (+)
LOC103028967 rrm2b,LOC108425040,LOC107702093,LOC107556385,LOC107724293,LOC107565196,LOC108256937 coding downstream 493605 22150369 ~ 22159424 (+)
G198943 NA non-coding upstream 36571 21619638 ~ 21619845 (+)
G198939 NA non-coding upstream 95201 21561002 ~ 21561215 (+)
G198881 NA non-coding upstream 257416 21398732 ~ 21399000 (+)
G198848 NA non-coding upstream 565385 21090756 ~ 21091031 (+)
G198842 NA non-coding upstream 596204 21060000 ~ 21060212 (+)
G198965 NA non-coding downstream 148710 21805474 ~ 21805739 (+)
G198968 NA non-coding downstream 164211 21820975 ~ 21841828 (+)
G199006 NA non-coding downstream 334768 21991532 ~ 21991627 (+)
G199056 rpl30,LOC105895124,LOC106589133,LOC106572903,LOC107568279,LOC107702100 non-coding downstream 539902 22196666 ~ 22200711 (+)
G199090 NA non-coding downstream 559115 22215879 ~ 22218387 (+)
LOC103037930 NA other upstream 273416 21358464 ~ 21383000 (+)
G198815 NA other upstream 853526 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1381562 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 1567429 20053028 ~ 20088987 (+)
G198540 NA other upstream 2409020 19246972 ~ 19247396 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 562501 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 1173467 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 3961164 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 4929475 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 5175190 26831954 ~ 26892623 (+)

Expression


Co-expression Network