G199279


Basic Information

Item Value
gene id G199279
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22863565 ~ 22865723 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU270546
AGGGAAGCCGGGGTATagtaagtaattaagtacacAGCAAGGGCCGCTCTACACAGTTGTCTTCTATGGCTTTAGAATTCTATTGCAGCAACTACATCTGACAGCTGTGGCATGTAATGATGACAAGACATGCTTATTACATCTCCCATTGCTGTATACACAGTATACGCCTATGTGCACAGTGGGCGTTGTGTGCCCACTCGGCGGCTTTAAGTCAGGAACATTGAAAAAGAGCAACATCAGAAAACAATGGAACACAAGTAAAGCAGTAAAAGagtcaaatgttttttaaagcacaGTTGGGACTGGTTACAGAGCAAGAGCAGGCAGTTGCCACTAATGCATTCTCACAGACGGAAAAAACCCAGCTTTAATCTATACCCAAGATAAGCGCTGATGTATTTCCTGTCCAGGTGGCCACTGTAATCACCTCTGCTTCTGCAGACGGAAGTCACATCTTTTATCGTGGGCATCTGCAGGCTTTACAGCAGCCACATCCCACTTGTTTATTGCCTCCCTCCTGACATGTGCTGTAGAATGGCTCGATTATGAATCGTGCCCATGCTGCTAAATATAGAGCGGGCCTTAAAAAGAAGCCACTGAATTTTGGCTTTTTGCCCAGATTGATCTCGTCATGAACTCGTAGCATGTAGCACATTTCCTCTTCCCATCTATTAGTACTCCAACAAGAGCCTGACACTCTCCCCAAGGAACGTGCACCCCctattgtgtttatatactgCAGGACTCTGGTATCAGTGGTGACCTAGAAACCACCTGAAATAAATGGTTAAAGTCAGACAATGGCAACCTTATGGCTACTAGTGCCACCTTATTAGAGGACCTGCTGTTTCCAACCCCTCCTTTGCACTGCAGCCTGCCTGCCCTCTGCTTGTTCTGTAGACCACAgtaaacacaatatacacacacttatataaagTCCTATCTTCTTTAGCATGCACATGcagtattaaaaatacagtCAGAGTATatgttaaaaagtgtaaaaagccAGTGCGACAGTCTTTGAGTTCTTGAGGTTAACATGGTCATTGATTAACAAGAACAGCGACATAATCCATTATAGACCACCCAGCCTACAGTTGCCATGCTCTGTTTGCTTTTGGCTCATAGAAGCATCTTAAGTCCTTAGATACCACGTAGTAAAGCTGGATTGCAGGTCCATATCAACATTATTGGCAGGTATCAAGATATTCCTGGCGgaccaattttttttgtttagaccAGACTTGTAtgctatatattaatatacaatgtgtCGCAAAAGTACGGAAAAAtccagataaaataaaaaacagtttggTAGATTGTGAGTATTAGATGCAAGCTTGTCTTAAACATTCTGTAGACCTTATGGTCAATTTTCTTGTTTAACTTAGTCACTGTTTAAACATGAACAAATAAAGTACTGTTAACAtcccataaaaaaaactgaagtaaaatccaagatggctgcattCAGAATGGCTACCATGATGGTGACATGGCCTAGAAAGTGTCCTCCCACAGATTGTGTCTAAACTTTGACCACATATCTATCAAcctgttttcattttatatgggtatttgcttatttttcaGACACCTGATACTAAGATCAACAAATTACAAATCTCTAGATTTGTAAAGACCTGCCATTCGCAGAGAAAATTGCTCTGCTAAAAACTTTCTACTATATTGTCATACACATGGCACATTTTTGTCTGTAAGGCTTGTGTTTCAGAATATAATGAATGATCTCACTGATCTTGTAGGAAAAAGTTTCCAAGACGTAGATGTTGTAAACCAACTCAATCTAGTTTTAAATGTTGACTTAAACATGCCTATGTCTTGGAAAGCagatagaaaaacaacaaagacaaaaaactaCAGTACTGCATTTGAAACTCTGTTACAAAGTACAGCTGAGAAAAGACACCCCTTAGCAATAAAACTGCCAGAACACTTTCACTAGAAAACCAAAGAAAAGGGCAAAACGCTCTTCTACGTCCACCCTATTTAATCGGTAAAAAACGCAGAACTCAGACAAGCCGACACCAGATACATTCCTTCGCTTTCTGTGTAtgttcacatacacacacacaatacacaccacACATCTAACCTAACCAAGGCACGTTCAGGCTCCAGTGTGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270546 True 2159 lncRNA 0.40 1 22863565 22865723

Neighbor

gene id symbol gene type direction distance location
LOC103041237 NA coding downstream 66479 22785605 ~ 22797086 (-)
mrpl53 mrpl53,LOC107702080,LOC107584350,LOC107724306,LOC107555578,LOC107743841 coding downstream 154341 22706447 ~ 22709224 (-)
LOC103022454 fabp11a,LOC103022454,LOC108425228,LOC108256763,LOC107724303,LOC107696199,LOC107584252 coding downstream 158543 22703592 ~ 22705022 (-)
LOC103022765 LOC108425224,LOC106597666,LOC100690679 coding downstream 175022 22685046 ~ 22688543 (-)
LOC103024849 heyl,LOC108424532,LOC108256789,LOC107584347,LOC107696201,LOC107724307 coding downstream 440020 22414788 ~ 22423545 (-)
tpd52 tpd52 coding upstream 16569 22882292 ~ 22917077 (-)
LOC103026418 stmn2,stmn2b,LOC107555571,LOC106588819,LOC107702121,LOC107743830 coding upstream 146116 23011839 ~ 23025980 (-)
gmnn gmnn,LOC107743838 coding upstream 299521 23165244 ~ 23169595 (-)
acot13 acot13 coding upstream 311116 23176839 ~ 23186671 (-)
LOC103041353 LOC108424552,LOC108256791,LOC107579360 coding upstream 514496 23380219 ~ 23392058 (-)
G199218 NA non-coding downstream 157279 22706073 ~ 22706286 (-)
G199173 fuca1 non-coding downstream 404783 22457704 ~ 22458782 (-)
G199174 fuca1 non-coding downstream 410509 22448708 ~ 22453056 (-)
G199121 NA non-coding downstream 595386 22267973 ~ 22268179 (-)
G199120 NA non-coding downstream 601517 22261841 ~ 22262048 (-)
G199281 NA non-coding upstream 1886 22867609 ~ 22869253 (-)
G199286 zbtb10,LOC107702118,LOC107555573,LOC107584258,LOC107696215,LOC107724278 non-coding upstream 59323 22925046 ~ 22925953 (-)
G199288 NA non-coding upstream 69997 22935720 ~ 22936265 (-)
G199299 NA non-coding upstream 239805 23105528 ~ 23132429 (-)
G199305 NA non-coding upstream 267329 23133052 ~ 23163518 (-)
LOC103023067 atxn1 other downstream 230133 22477551 ~ 22633432 (-)
rpl30 rpl30,LOC107568279,LOC107702100 other downstream 662764 22197731 ~ 22200801 (-)
G198987 NA other downstream 949806 21913121 ~ 21913759 (-)
triqk triqk,LOC107724370,LOC107710222,LOC107702072 other downstream 1109953 21683031 ~ 21753612 (-)
G198900 sfpq,LOC102797747 other downstream 1512433 21330006 ~ 21351132 (-)
G199283 NA other upstream 5345 22871068 ~ 22878461 (-)
sync NA other upstream 611929 23477652 ~ 23484819 (-)
smim12 smim12,LOC107698988,LOC107726140,LOC107664707,LOC107712635,LOC107555952 other upstream 1399058 24264781 ~ 24267742 (-)
G199796 NA other upstream 2909062 25774785 ~ 25782032 (-)
G199807 macf1 other upstream 2941912 25807635 ~ 25821905 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014149 NA non-coding NC_007130.7 CM002903.2 31943508 ~ 31954728 (+)
grasscarp (Ctenopharyngodon idella) G233017 NA non-coding CI01000054 null 7508766 ~ 7513700 (+)
eurasian perch (Perca fluviatilis) G134597 NA non-coding NC_053124.1 CM020921.1 18409926 ~ 18414430 (+)
mexican tetra (Astyanax mexicanus) G133903 NA non-coding NC_035911.1 CM008314.1 22805403 ~ 22809161 (-)