G199378 (yars,LOC107691530,LOC107568799,LOC107687080,LOC107724337,LOC107709269)


Basic Information

Item Value
gene id G199378
gene name yars,LOC107691530,LOC107568799,LOC107687080,LOC107724337,LOC107709269
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 23587762 ~ 23593581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU270681
ttttatttcatattacatttattgtgtaTGATCTTGTTACCATTATCTCTTTAATATGTAAAGATGAGTATATACTGAAACCGGTTATGAGGGCTTGGACAACATCCTCATGCCTGTTAACTACAGGTAACTGCTGAGTCACCACAAGAAGACCTGAGCTGAGCAACAACAAAACAGTATATCTAAGAGCTGACCAGTCCATCTGCCACCAAATCAATACAATACAGATATTTTGGGCAGTTTTGCATGCGATGTGCAGCATATGAAGACTGATGACACATGATGACACATGAACGCATTTGAATAGGTGTGGTTATACTGTTTCAGACCAGACACGATGTAAAGTAAGGAATGACTGGAGCTCTGTGAAAAGGTCTTTCCTCAGACTTCAACTGCAGTTCCTATGACGAAAAATAGTATCTGTTATTGTGCATTTGTCATTGGAGGATGTGGAGATGCATTGGTAGCTATACATTTGAAGACTAGATGttgtaaagaagaagaagaagagaagagaacatCTGTCTAGCTGATGTTGCCTCCTTTCAGTGTTTTGCAGGTGATCTTTCCTAGTTTGGTCATCAAATCTTTCTCTTTCCACTGAGCTGTGCACTCGTCTGAGATCTTCAGGTCCAcCTGTAATTTCTCAAAGACCTTCTTCTTTGGCTTCAGTTCATCGTCTGGCTTGCCCGACTCAAATCCCTCAACAAAAACACGGTCACCTGGTGCCGATCCCTCAGGTGGATCTAAAGGCTCTACTTTCCTGGGCTCACCCTCAACTGAGGCACAGAGCAGCATAGCCTGAGACTCAATCCCACGCATCTTCTGGGGCTTCAGATTGCAGAGCATCAGCACAAGACGGTCCTGAAGCTGCTCTTGGGAAACGTAAGCCACCAATCCACTCACAACAGTACGAGGCTGCTCCTCTCCGACATCAATCTTCTCCAAATACAGGGAGTCTGCGTCTGGATGCTTCTCTACACTGATGATTTTGCCCACTCTGATATCTAGTCTGGAGGGGATGATGTCATCTTCCTCTGCTGCTGCATTTTTGGGGTTCCCTTTTGTTGCAAATTTGTTTTTGGATGGCTCAGGGTAGGCTGAGTTGGTCAGTTTCTTCAAAGCTGGCATCTCAAACTTTTTCCTAATGGGGTCCATAAGCTTGTTTAGAGCCACTTCTACTGAGGCCTTTAAGTCACCAGGGTGGATTTGCTCCTCAGCAAAGTGCTTCTCTACTTCCTCAAAGGATGTGTAGACCTGGTCCCCACCCCACTTAGGATctcttttaatcacaaattCAGAATTGAGGGGGAAGAGGACATGCTTGACAAATGAGAGAACACCATTGTTCTGAATGTTTCCAGGCTCACAGAAAGCTTTCTTCAGCTTCTTCTTTACATCCTCCTTTTTATCAAGGAGGTCTATTTTGGATTCCTCCTCAGAGGAGCTCATCTTGGTTCCAGTCAAACCAGGAACCATGGGGTTCATCATGTGGATTCGTTTTGTGTAACCTAAAGAGGGCAGATACTTTTCTGCCAGAGTGAAGATCTTCCTCTGGTCCACTCCACCAAACTGAGCGTCCACCTTCAAGTATTCCTCATCCAGCGCCTGCAGTCCTGGGTAGAGCAGGCCACTCAGGAGAGGATGCTCCACCTGCTTCACCACCTCAGCTCCAGCCTTCTTAGCATCGTGCTCAGTGATCATGGAAGAGAGACGATACACATCCAGTGTGTACT

Function

symbol description
yars Predicted to enable tyrosine-tRNA ligase activity. Predicted to be involved in tyrosyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Predicted to be located in cytosol and nuclear body. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate C. Orthologous to human YARS1 (tyrosyl-tRNA synthetase 1).

NR:

description
tyrosine--tRNA ligase, cytoplasmic

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270681 True 1736 lncRNA 0.45 10 23587762 23593581

Neighbor

gene id symbol gene type direction distance location
kiaa1522 NA coding upstream 843 23486649 ~ 23586919 (+)
rbbp4 rbbp4,LOC107584269,LOC107568807,LOC107709266 coding upstream 110354 23471598 ~ 23477408 (+)
bzw2 bzw2,LOC107709265,LOC107702135,LOC107724358 coding upstream 118231 23441994 ~ 23469531 (+)
LOC103041859 LOC103041859,LOC108425359,LOC107696203,LOC107584268,LOC107555559,LOC107702133,LOC107709262,LOC107724349 coding upstream 354759 23230207 ~ 23233003 (+)
scin scin,LOC107724348,LOC107702132,LOC107696204,LOC107709261 coding upstream 360691 23202682 ~ 23227071 (+)
mycl mycl coding downstream 85377 23678958 ~ 23685065 (+)
trit1 trit1 coding downstream 94931 23688512 ~ 23755557 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding downstream 305102 23898683 ~ 23932040 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding downstream 348973 23942554 ~ 23948993 (+)
LOC103034043 NA coding downstream 647783 24241364 ~ 24251389 (+)
G199362 NA non-coding upstream 161678 23425878 ~ 23426084 (+)
G199337 NA non-coding upstream 251265 23336261 ~ 23336497 (+)
G199333 NA non-coding upstream 303338 23284140 ~ 23284424 (+)
G199266 gmnn,LOC107696207 non-coding upstream 418169 23165496 ~ 23169593 (+)
G199250 NA non-coding upstream 586277 22936494 ~ 23001485 (+)
G199417 NA non-coding downstream 46967 23640548 ~ 23640780 (+)
G199426 NA non-coding downstream 97917 23691498 ~ 23693813 (+)
G199434 NA non-coding downstream 174625 23768206 ~ 23768432 (+)
G199436 NA non-coding downstream 175815 23769396 ~ 23770464 (+)
G199424 NA non-coding downstream 189350 23782931 ~ 23785959 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 718505 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 1364726 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 2204762 21358464 ~ 21383000 (+)
G198815 NA other upstream 2784872 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 3312908 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 2024347 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 2992658 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 3238373 26831954 ~ 26892623 (+)
G200104 NA other downstream 3690639 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 3710940 27304521 ~ 27305586 (+)

Expression


Co-expression Network