G199469


Basic Information

Item Value
gene id G199469
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 24121268 ~ 24173926 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU270797
agattcagatctagcattcgataaacacatatctaatgttactagaacagcttttctacacctccgtaatattgccaagctaagaaatgccctatcactgcatgacgcagaaaaattagtacatgcctttattacctcaaggctagattattgtaatgcgctactgtctggatgttccggcagtaacttaaataaacttcagctagttcaaaatgctgcagccagggtccttactaaaacgagaaaatttgaccatattagtccagtactatcagcactgcactggcttccagtcaaattccgcatagactataaaattctcctgttaacgtataaagccctacacgggctcgctcctgagtatttacaagacctcatctcctgttatgaaccaccgcgattacttagatctcagggtgctggtttattagtagttcctaaaattcagaggagctctgcaggaggcaactctggaataatctccccgaatatgttcgggactcagacacagtctcaatctttaagtctagactgaaaacttacttgtttagtttagcttttggtaattaatgtttttccctttagataaggctgcagattcaggggttcatggacagaggaaattgtggtaaactgagatgctggtgctgttgttctcccactgcacacggtcactcaggtttgtggacggtggagtgggtggatgccagtgtttcagggagcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttatttagatctgccggagtcatttgccacactctgataatgttttatattctctgttttacataaatccagtcaaaactaattccatctctctgctttcctccgagttactgactgcccacctgtctgacccgataccgcgggatgttggaccctcaggctctcatgtcctctgtctggccagactggaagttactgaagtcagctcttctccatccaccaccaccacttctccatcagctgctcatcatccatctcactctataagccattagtggagctgctatacacctgaatatataaaacctatgtggatgtatgaaagactttttaaaattaatttaaaagccatttgaccagtggtaggatggtcccccctttaatgtgagtcttggtcctcccaaggtttcttcctcctcctgcagctctgagggagtttttccttgcctccgcgctcactgggggttctgtattatgtatattctatgtttaatgttttgcctgattctttgtcctgtaatcatgtttctgtaaagctgctttgtgccaacaccagttgtaaaaagcgctatacaaataaatttgatttgatttgaTttgaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270797 True 1378 lncRNA 0.42 3 24121268 24173926

Neighbor

gene id symbol gene type direction distance location
ilf2 ilf2,LOC105924049,LOC106569884 coding upstream 172275 23942554 ~ 23948993 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding upstream 189228 23898683 ~ 23932040 (+)
trit1 trit1 coding upstream 365711 23688512 ~ 23755557 (+)
mycl mycl coding upstream 436203 23678958 ~ 23685065 (+)
kiaa1522 NA coding upstream 534349 23486649 ~ 23586919 (+)
LOC103034043 NA coding downstream 67438 24241364 ~ 24251389 (+)
csmd2 csmd2,LOC107698986 coding downstream 474107 24648033 ~ 25075791 (+)
trappc3 trappc3 coding downstream 1196575 25370501 ~ 25377202 (+)
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding downstream 1242642 25416568 ~ 25526086 (+)
LOC103042327 ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276 coding downstream 1355478 25529404 ~ 25560124 (+)
G199424 NA non-coding upstream 335309 23782931 ~ 23785959 (+)
G199436 NA non-coding upstream 350804 23769396 ~ 23770464 (+)
G199434 NA non-coding upstream 352836 23768206 ~ 23768432 (+)
G199426 NA non-coding upstream 427455 23691498 ~ 23693813 (+)
G199417 NA non-coding upstream 480488 23640548 ~ 23640780 (+)
G199546 NA non-coding downstream 46435 24220361 ~ 24220614 (+)
G199588 NA non-coding downstream 263879 24437805 ~ 24438039 (+)
G199625 NA non-coding downstream 910058 25083984 ~ 25299692 (+)
LOC111195489 NA non-coding downstream 937883 25111809 ~ 25112275 (+)
LOC103041709 NA non-coding downstream 1123116 25297042 ~ 25300856 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 1252011 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 1898232 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 2738268 21358464 ~ 21383000 (+)
G198815 NA other upstream 3318378 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 3846414 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 1444002 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 2412313 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 2658028 26831954 ~ 26892623 (+)
G200104 NA other downstream 3110294 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 3130595 27304521 ~ 27305586 (+)

Expression


Co-expression Network