G199683


Basic Information

Item Value
gene id G199683
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25377397 ~ 25378146 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271049
TTTAAATCAGAACAGAGCCGCAGTCTTGCATGGTCTGGTAGAAGACAGGCTTTATGGAAAGTTCAGTGCTGTTCAGTCAGTCTGGGAGGGGTCACAGAGCCGGGTAGAGAATGGGACCTGTGTGTCTAGCGCAAGTGCCTAGTCTGTGGCAGGTCCCTCCACACGTGTGTAATGAAGTGTTGTGGCACCAGCCCTGTTCCTCTCCTGAGGTTACCAAGAAGAGGCCTTTACACTGCTGGGGACTGTTATACCTGCAGTGCAGCTGAAGTCAAACAACAATAACAAGGGCCTAATTTGTCTCAGATGTTTACTCAAGCAACATGGAAGCAATCAAGGGCTGCAAGTTCACCGGTGCGTGTGCAGGACAGGGTGTTTTTGGAGACGGTGTGTTTTAACAGGGTGACTTAGGGGTGTGTAGACTGGTTTAGGGCATAGGGCAGAGATCGTTGGCCATTCACTAAAAGGCGCTCATTTCTCTAGCAGATTTCTGGGCCTAACACCTGTTAATGGCCTTACGTCATTCAGGAGTCGCAGGCAGGAGTCTCATTTTCCAACATTCCTCACCTCGTCAATCtcaagtggaacgaaaatgagtGTTAATGTAGTGAGTTCCTAGTTTGTGGAGCTTGAATTCAATCTCGGAAACTTCAGGCATGTGGTATTTTTGCTGTTTCTTAGGTGGTTTTTCAGCCTActttaaatttaattgtaaCTCTTAAAGTTTaaccatttgtttttcttcacagtTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271049 True 750 lncRNA 0.46 1 25377397 25378146

Neighbor

gene id symbol gene type direction distance location
trappc3 trappc3 coding upstream 195 25370501 ~ 25377202 (+)
csmd2 csmd2,LOC107698986 coding upstream 301606 24648033 ~ 25075791 (+)
LOC103034043 NA coding upstream 1126008 24241364 ~ 24251389 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding upstream 1428404 23942554 ~ 23948993 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding upstream 1445357 23898683 ~ 23932040 (+)
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding downstream 38422 25416568 ~ 25526086 (+)
LOC103042327 ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276 coding downstream 151258 25529404 ~ 25560124 (+)
anln NA coding downstream 189526 25567672 ~ 25579392 (+)
ak2 ak2,LOC107556372,LOC107710539,LOC107653866,LOC107670285 coding downstream 202842 25580988 ~ 25587640 (+)
rnf19b rnf19b,LOC107710473,LOC107724316 coding downstream 211402 25589548 ~ 25614781 (+)
G199669 NA non-coding upstream 68450 25308642 ~ 25308947 (+)
LOC103041709 NA non-coding upstream 76541 25297042 ~ 25300856 (+)
G199625 NA non-coding upstream 77705 25083984 ~ 25299692 (+)
LOC111195489 NA non-coding upstream 265122 25111809 ~ 25112275 (+)
G199588 NA non-coding upstream 939358 24437805 ~ 24438039 (+)
G199684 NA non-coding downstream 433 25378579 ~ 25378825 (+)
G199691 NA non-coding downstream 138751 25516897 ~ 25548341 (+)
G199739 wisp1,LOC108425715,LOC107670277,LOC107710734,LOC107574716,LOC107724346,LOC105022817 non-coding downstream 546073 25924219 ~ 25925353 (+)
G199741 NA non-coding downstream 551778 25929924 ~ 25930410 (+)
G199746 NA non-coding downstream 594662 25972808 ~ 25973082 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 2508140 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 3154361 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 3994397 21358464 ~ 21383000 (+)
G198815 NA other upstream 4574507 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 5102543 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 239782 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 1208093 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 1453808 26831954 ~ 26892623 (+)
G200104 NA other downstream 1906074 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 1926375 27304521 ~ 27305586 (+)

Expression


Co-expression Network