G199691


Basic Information

Item Value
gene id G199691
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25516897 ~ 25548341 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271061
cggtataccgtggtattaaaatgcacggttatcataccgtgtgtgtttgcttattaccggtaaaacgcaagccagcggagaaactcacccgcgcatgcgcaactctgctccacttcagctcctcagcacacagcggtgagaacggcagaaagtgcatcagactaaacaaatctccgtccgcctaaaaaaaggctaaactaaaatcagcagtgtgggactatttcagagactcgccgaacgcacccgaggatggttatccgatttataatcaatgtggccgtaaagtcacagctaaaggtggacatacgtcaaacctgttctcccatctccaagaacaccaccccaccgtgcagcgcaaagtatgtgtttagtttataattttaatctgaacataaataaaatctctttgtagtcgtgcacaacccatgcggtaagcgcccgcaaaagcgctgagttatccgaaatttgggcacgcaggtacaggcgtgaagtgcgtgctacgacggattcacgtgtccgtgtaaaggtgctcgccggactggatgtgaaagacgccattcatttacatgcgttaattttcaaattctgacgtttttcatgtgttaaaaccagactcagaaataaatcccctctatctggttatataccaacttggcagtaaaacggacgtttacaacagttgttgatcagacactgacccaggctcagtttatcagatattaaatagtttaaacttaaataattgtactgaatagtttaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271061 True 762 lncRNA 0.44 2 25516897 25548341

Neighbor

gene id symbol gene type direction distance location
trappc3 trappc3 coding upstream 139695 25370501 ~ 25377202 (+)
csmd2 csmd2,LOC107698986 coding upstream 441106 24648033 ~ 25075791 (+)
LOC103034043 NA coding upstream 1265508 24241364 ~ 24251389 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding upstream 1567904 23942554 ~ 23948993 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding upstream 1584857 23898683 ~ 23932040 (+)
anln NA coding downstream 19331 25567672 ~ 25579392 (+)
ak2 ak2,LOC107556372,LOC107710539,LOC107653866,LOC107670285 coding downstream 32647 25580988 ~ 25587640 (+)
rnf19b rnf19b,LOC107710473,LOC107724316 coding downstream 41207 25589548 ~ 25614781 (+)
macf1 macf1 coding downstream 76216 25624557 ~ 25848463 (+)
LOC103023238 bmp8a,LOC107556408,LOC107710496,LOC107724317 coding downstream 301187 25849528 ~ 25865274 (+)
G199684 NA non-coding upstream 138072 25378579 ~ 25378825 (+)
G199683 NA non-coding upstream 138751 25377397 ~ 25378146 (+)
G199669 NA non-coding upstream 207950 25308642 ~ 25308947 (+)
LOC103041709 NA non-coding upstream 216041 25297042 ~ 25300856 (+)
G199625 NA non-coding upstream 217205 25083984 ~ 25299692 (+)
G199739 wisp1,LOC108425715,LOC107670277,LOC107710734,LOC107574716,LOC107724346,LOC105022817 non-coding downstream 375878 25924219 ~ 25925353 (+)
G199741 NA non-coding downstream 381583 25929924 ~ 25930410 (+)
G199746 NA non-coding downstream 424467 25972808 ~ 25973082 (+)
G199758 gabbr2,LOC106570447 non-coding downstream 575577 26123918 ~ 26133594 (+)
G199767 NA non-coding downstream 786375 26334716 ~ 26342264 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 2647640 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 3293861 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 4133897 21358464 ~ 21383000 (+)
G198815 NA other upstream 4714007 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 5242043 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 69587 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 1037898 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 1283613 26831954 ~ 26892623 (+)
G200104 NA other downstream 1735879 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 1756180 27304521 ~ 27305586 (+)

Expression


Co-expression Network