ndufs5 (ndufs5)


Basic Information

Item Value
gene id ndufs5
gene name ndufs5
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25617928 ~ 25620135 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271109
CGAGTTTTGCAGCAGTGTCGCAGATCTCGCTGTGCTGCCTGTGGACGGTAAGCGGTCAGTGGCTTTGGGAAGGTTAAAGAACAGCAGGAACTATGCCTTTCATTGATCTCCAGTCGAAGTTGGGCTTCGACGTGGACCGCTGGATGCTGATCCAGAGTGGAAAGCAGCCTCTTAGTCGACCTGCACGCTGCCATGCCTTTGAGAAGGAATATATAGAGTGCGCACATGGCATTGGCCAAACCAGGGCTTTAAGAGAATGCAAGGTGGAGATGGAAGATTTCTATGAATGCGTGCATCGGGACAAGACGTTCCGGCGCTTGCAAGCGATCAAGCAGCAGAGAGACAAGTTGATCAAAGAGAACGCCTACACGCCCCCCCCACATCACACTGGCCATACAGAAGCTTAGGCATGAACCCGGTAAAGAGAGCGGAGATCTCACTCAGTCCTTTGCCAGCCACACTGCAACATCATCAGTGTGCTCAGTTTCTTGTGTATTATAATGATTATTGTTTATCAGTTTCCtttgaatttaaataaataaatactattgATCA
>TU271110
CGAGTTTTGCAGCAGTGTCGCAGATCTCGCTGTGCTGCCTGTGGACGAACTATGCCTTTCATTGATCTCCAGTCGAAGTTGGGCTTCGACGTGGACCGCTGGATGCTGATCCAGAGTGGAAAGCAGCCTCTTAGTCGACCTGCACGCTGCCATGCCTTTGAGAAGGAATATATAGAGTGCGCACATGGCATTGGCCAAACCAGGGCTTTAAGAGAATGCAAGGTGGAGATGGAAGATTTCTATGAATGCGTGCATCGGGACAAGACGTTCCGGCGCTTGCAAGCGATCAAGCAGCAGAGAGACAAGTTGATCAAAGAGAACGCCTACACGCCCCCCCCACATCACACTGGCCATACAGAAGCTTAGGCATGAACCCGGTAAAGAGAGCGGAGATCTCACTCAGTCCTTTGCCAGCCACACTGCAACATCATCAGTGTGCTCAGTTTCTTGTGTATTATAATGATTATTGTTTATCAGTTTCCtttgaatttaaataaataaatactattgATCA
>TU271111
aaaaagaataataatctGAAGATAAATCTGGCGAGCCCCTCTTTATCCTAAGGGCCCAACACTAGACAGGCACTAGACAATTGGAACACAGCCAGTGACGTCAGGCCGAGTTTTGCAGCAGTGTCGCAGATCTCGCTGTGCTGCCTGTGGACGGTAAGCGGTCAGTGGCTTTGGGAAGGTTAAAGAACAGCAGGAACTATGCCTTTCATTGATCTCCAGTCGAAGTTGGGCTTCGACGTGGACCGCTGGATGCTGATCCAGAGTGGAAAGCAGCCTCTTAGTCGACCTGCACGCTGCCATGCCTTTGAGAAGGAATATATAGAGTGCGCACATGGCATTGGCCAAACCAGGGCTTTAAGAGAATGCAAGGTGGAGATGGAAGATTTCTATGAATGCGTGCATCGGGACAAGACGTTCCGGCGCTTGCAAGCGATCAAGCAGCAGAGAGACAAGTTGATCAAAGAGAACGCCTACACGCCCCCCCCACATCACACTGGCCATACAGAAGCTTAGGCATGAACCCGGTAAAGAGAGCGGAGATCTCACTCAGTCCTTTGCCAGCCACACTGCAACATCATCAGTGTGCTCAGTTTCTTGTGTATTATAATGATTATTGTTTATCAGTTTCCtttgaatttaaataaataaatactattgATCA
>XM_007258832.3
CAGCCAGTGACGTCAGGCCGAGTTTTGCAGCAGTGTCGCAGATCTCGCTGTGCTGCCTGTGGACGGTAAGCGGTCAGTGGCTTTGGGAAGGTTAAAGAACAGCAGGAACTATGCCTTTCATTGATCTCCAGTCGAAGTTGGGCTTCGACGTGGACCGCTGGATGCTGATCCAGAGTGGAAAGCAGCCTCTTAGTCGACCTGCACGCTGCCATGCCTTTGAGAAGGAATATATAGAGTGCGCACATGGCATTGGCCAAACCAGGGCTTTAAGAGAATGCAAGGTGGAGATGGAAGATTTCTATGAATGCGTGCATCGGGACAAGACGTTCCGGCGCTTGCAAGCGATCAAGCAGCAGAGAGACAAGTTGATCAAAGAGAACGCCTACACGCCCCCCCCACATCACACTGGCCATACAGAAGCTTAGGCATGAACCCGGTAAAGAGAGCGGAGATCTCACTCAGTCCTTTGCCAGCCACACTGCAACATCATCAGTGTGCTCAGTTTCTTGTGTATTATAATGATTATTGTTTATCAGTTTCCtttgaatttaaataaataaatactattgATCACTAaga
>XM_007258834.3
TCTCGCTGTGCTGCCTGTGGACGAACTATGCCTTTCATTGATCTCCAGTCGAAGTTGGGCTTCGACGTGGACCGCTGGATGCTGATCCAGAGTGGAAAGCAGCCTCTTAGTCGACCTGCACGCTGCCATGCCTTTGAGAAGGAATATATAGAGTGCGCACATGGCATTGGCCAAACCAGGGCTTTAAGAGAATGCAAGGTGGAGATGGAAGATTTCTATGAATGCGTGCATCGGGACAAGACGTTCCGGCGCTTGCAAGCGATCAAGCAGCAGAGAGACAAGTTGATCAAAGAGAACGCCTACACGCCCCCCCCACATCACACTGGCCATACAGAAGCTTAGGCATGAACCCGGTAAAGAGAGCGGAGATCTCACTCAGTCCTTTGCCAGCCACACTGCAACATCATCAGTGTGCTCAGTTTCTTGTGTATTATAATGATTATTGTTTATCAGTTTCCtttgaatttaaataaataaatactattgATCACTAaga

Function

symbol description
ndufs5 Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Orthologous to human NDUFS5 (NADH:ubiquinone oxidoreductase subunit S5).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271109 False 555 TUCP 0.48 3 25618034 25620129
TU271110 False 514 TUCP 0.48 3 25618034 25620129
TU271111 True 661 TUCP 0.48 3 25617928 25620129
XM_007258832.3 False 579 mRNA 0.49 3 25618016 25620135
XM_007258834.3 False 496 mRNA 0.48 3 25618058 25620135

Neighbor

gene id symbol gene type direction distance location
rnf19b rnf19b,LOC107710473,LOC107724316 coding upstream 3147 25589548 ~ 25614781 (+)
ak2 ak2,LOC107556372,LOC107710539,LOC107653866,LOC107670285 coding upstream 30288 25580988 ~ 25587640 (+)
anln NA coding upstream 38536 25567672 ~ 25579392 (+)
LOC103042327 ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276 coding upstream 57804 25529404 ~ 25560124 (+)
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding upstream 91842 25416568 ~ 25526086 (+)
macf1 macf1 coding downstream 4422 25624557 ~ 25848463 (+)
LOC103023238 bmp8a,LOC107556408,LOC107710496,LOC107724317 coding downstream 229393 25849528 ~ 25865274 (+)
LOC103023870 si:rp71-45k5.4,psma2,LOC103023870,LOC103045926,LOC107724313,LOC108425697,LOC108440756,LOC107592434 coding downstream 256423 25876558 ~ 25880657 (+)
LOC103031356 NA coding downstream 265078 25885213 ~ 25887398 (+)
LOC103024803 ndrg1a,LOC108425723,LOC107670279,LOC107724345,LOC107710403,LOC107653857,LOC107556406 coding downstream 286922 25907057 ~ 25922411 (+)
G199691 NA non-coding upstream 69587 25516897 ~ 25548341 (+)
G199684 NA non-coding upstream 239103 25378579 ~ 25378825 (+)
G199683 NA non-coding upstream 239782 25377397 ~ 25378146 (+)
G199669 NA non-coding upstream 308981 25308642 ~ 25308947 (+)
LOC103041709 NA non-coding upstream 317072 25297042 ~ 25300856 (+)
G199739 wisp1,LOC108425715,LOC107670277,LOC107710734,LOC107574716,LOC107724346,LOC105022817 non-coding downstream 304084 25924219 ~ 25925353 (+)
G199741 NA non-coding downstream 309789 25929924 ~ 25930410 (+)
G199746 NA non-coding downstream 352673 25972808 ~ 25973082 (+)
G199758 gabbr2,LOC106570447 non-coding downstream 503783 26123918 ~ 26133594 (+)
G199767 NA non-coding downstream 714581 26334716 ~ 26342264 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 2748671 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 3394892 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 4234928 21358464 ~ 21383000 (+)
G198815 NA other upstream 4815038 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 5343074 20273021 ~ 20274854 (+)
c23h18orf21 LOC103027551 other downstream 966104 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 1211819 26831954 ~ 26892623 (+)
G200104 NA other downstream 1664085 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 1684386 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 2014544 27634679 ~ 27740109 (+)

Expression


Co-expression Network