G199746


Basic Information

Item Value
gene id G199746
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25972808 ~ 25973082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271146
atttgttggctttagtaagtttaataacattaattttagtatacttgtcagatcttatttataaaaactttttttagaagacagaggttattctgcgcgcaatgccgcgccgctgcgccaagcaccactttgcgtgcctgacatttcagagcgctggacgagattttaattcatgaattaatatatttaatattttaataaatttgccctggtgataagaaacgaatgctaacatatagcgttatatttctgtgtatttcaaatgttttaagttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271146 True 275 lncRNA 0.33 1 25972808 25973082

Neighbor

gene id symbol gene type direction distance location
sla LOC108425730 coding upstream 3456 25959452 ~ 25969352 (+)
LOC103024803 ndrg1a,LOC108425723,LOC107670279,LOC107724345,LOC107710403,LOC107653857,LOC107556406 coding upstream 50397 25907057 ~ 25922411 (+)
LOC103031356 NA coding upstream 85410 25885213 ~ 25887398 (+)
LOC103023870 si:rp71-45k5.4,psma2,LOC103023870,LOC103045926,LOC107724313,LOC108425697,LOC108440756,LOC107592434 coding upstream 92151 25876558 ~ 25880657 (+)
LOC103023238 bmp8a,LOC107556408,LOC107710496,LOC107724317 coding upstream 107534 25849528 ~ 25865274 (+)
ctnnal1 ctnnal1,LOC107653856,LOC107670281,LOC107710384 coding downstream 25147 25998229 ~ 26074411 (+)
elp2 elp2 coding downstream 105568 26078650 ~ 26113762 (+)
rp9 rp9,LOC107653847,LOC107710715,LOC107556368,LOC107556335,LOC107670274 coding downstream 642062 26615144 ~ 26623597 (+)
LOC103028188 elmo1,LOC108425788,LOC107556397,LOC107556334,LOC107710279,LOC107724338,LOC107702083,LOC108257187 coding downstream 653993 26627075 ~ 26747079 (+)
rbm48 rbm48,LOC107722129,LOC107566766 coding downstream 801809 26774891 ~ 26777801 (+)
G199741 NA non-coding upstream 42398 25929924 ~ 25930410 (+)
G199739 wisp1,LOC108425715,LOC107670277,LOC107710734,LOC107574716,LOC107724346,LOC105022817 non-coding upstream 47455 25924219 ~ 25925353 (+)
G199691 NA non-coding upstream 424467 25516897 ~ 25548341 (+)
G199684 NA non-coding upstream 593983 25378579 ~ 25378825 (+)
G199683 NA non-coding upstream 594662 25377397 ~ 25378146 (+)
G199758 gabbr2,LOC106570447 non-coding downstream 150836 26123918 ~ 26133594 (+)
G199767 NA non-coding downstream 361634 26334716 ~ 26342264 (+)
G199775 NA non-coding downstream 512154 26485236 ~ 26485568 (+)
G199910 NA non-coding downstream 524369 26497451 ~ 26498105 (+)
G199920 NA non-coding downstream 552053 26525135 ~ 26525376 (+)
ndufs5 ndufs5 other upstream 352673 25617928 ~ 25620135 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 3103551 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 3749772 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 4589808 21358464 ~ 21383000 (+)
G198815 NA other upstream 5169918 20802371 ~ 20802890 (+)
c23h18orf21 LOC103027551 other downstream 613157 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 858872 26831954 ~ 26892623 (+)
G200104 NA other downstream 1311138 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 1331439 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 1661597 27634679 ~ 27740109 (+)

Expression


Co-expression Network