c23h18orf21 (LOC103027551)


Basic Information

Item Value
gene id c23h18orf21
gene name LOC103027551
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26586239 ~ 26613188 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271396
CGGACAACCTGTGAGATTCTGACTGAGCCTCATTTcacatcctctctctcttaacTTCAGCAGACATGGCTACATTCATCTCGATGGCCACCTGTCACGCTTGTAATAAGACATCCAGACAAGTTGGAATTAACAGGGAATTCTTGGCTGCCTTTTCAAAGACCTACGGCACCCCGATGAGCACGGGCAAGCGCAAGACCCCTCAGTCAGCCAACAAGCCTACACCAAAGTCTGGAACCCATGAGAAGACCCcacacaaaacaccacacagaACACCAGCATCAAAATCCTCAGACAGCGGCAGCTCATCAAAGTCATCCAGTGTGAAGAAGTCTGCTTTCTCTCGTCTTAGGAAGCTCCTGATGCTTGAGGACAGCCAGAAGAGTAAGAAAGGGGGTCTGAAAGACTTCCTCTCCTCTTTGTGAGGGCCTTAAGGGGCCACAGAAACCCCACATCGGCAGGCTGTGGCCTACTTTGGGCAGGGCTCCTGGAATTCAGAGCAGCTCAGAGAGTGGGGCAGGGGGTCTGGACCGCTGGTCACTTCACTCTGTGCAACAGTGCCACCTAGTGGTCCAGTCACTACAGCCTGGTCACAAACTCCAGGCTCCCATATTTCCAGCAGTCATCACCCCCAAACCAACCTGGTGTTTCTTCAGGGGTCTCCCGGGACCACTTATGTCCTGTTCTAGTTAAGGACTTGGAGAGAACCACATGGTTAATTACACAGCTTTCACTGAGGAGTTTCTATTACAGCTGGTAGTCTGTAAGCACTGTTCTATAATCTGATCTATAATCTGATCTATAATCGAATGTTGTAATTTATACTTATATCTTTGATATCTAGGAGGAAAGTGATCCTAGTGGGATGCTGTTGTTACAAGATCATGactacttacttactttatatCAATGCCTATGTAACTGAAATATTTTGTACACTTATGGTGCATATGGTGAAAGTTGTGGTGATTGCTTGTGGTTTACCTGATGTTTACATTTGTTGGGCTGTTCTGCCCTGCAACTGTATTTCAAAGACCAAAGATATGTTGTTGAATGTGATTCTCATGCAGTATTTTCAGCTAAATACAGCTTGTTtgtaaatcattgttttttttatttgttcatcaCTTTCTATTTTCAATAAATCAAGTCCAAATCTGC
>XM_007258855.3
agggaggagaagaaaaggagTAGCAAAGGTTTCCTGACGCAGGCACTGAGTATGAAGAGAAGAACTTCATTTCCCACAATCCCTGTGGTGAATCGTGAAGAATTGTGGGTAGTTGTAGCTGAGACAGCgtgttagccagctagctagctagtttgttGTCAACACAAGTGAACGATTCACTTTATTTCCCTATAGATTTCCTCAGTAAGTTAGATAAGTGATATATTATCAGTATCAGCGGTGTGTTGTCTGTAATAGGAACTGCTGTGTGTTTAATCAGAGCAGCCGCGCTGAACCATGACTGATAAGAAGCTGCAGTACAGAACCGAGGGGTTTCTGATGAGCGCCTCTGCGCTCTTTAAAGACACGTGTACAGAGCAGGCTCGCTTCCTCATGCAGAGGCATCAGATGAGTGCTCCTGCCCTGCCAGACACTGTGCTCTGCCCCTTTTGTTACCAGTGGCGCCAACCAGGCGAGTACCGTGTGAGGCTGCGTCCCAAACGCAGGCCGTCTGCGCAGGTGAGGAGGCTGCTCAGGAGAGAAGCAGCCCACAAGAggctcagtgctggagaaatgaAGGTTCTCCAGAAATTCAGAAAGGCCTCCAATGTTCTGATGGCCACCTGTCACGCTTGTAATAAGACATCCAGACAAGTTGGAATTAACAGGGAATTCTTGGCTGCCTTTTCAAAGACCTACGGCACCCCGATGAGCACGGGCAAGCGCAAGACCCCTCAGTCAGCCAACAAGCCTACACCAAAGTCTGGAACCCATGAGAAGACCCcacacaaaacaccacacagaACACCAGCATCAAAATCCTCAGACAGCGGCAGCTCATCAAAGTCATCCAGTGTGAAGAAGTCTGCTTTCTCTCGTCTTAGGAAGCTCCTGATGCTTGAGGACAGCCAGAAGAGTAAGAAAGGGGGTCTGAAAGACTTCCTCTCCTCTTTGTGAGGGCCTTAAGGGGCCACAGAAACCCCACATCGGCAGGCTGTGGCCTACTTTGGGCAGGGCTCCTGGAATTCAGAGCAGCTCAGAGAGTGGGGCAGGGGGTCTGGACCGCTGGTCACTTCACTCTGTGCAACAGTGCCACCTAGTGGTCCAGTCACTACAGCCTGGTCACAAACTCCAGGCTCCCATATTTCCAGCAGTCATCACCCCCAAACCAACCTGGTGTTTCTTCAGGGGTCTCCCGGGACCACTTATGTCCTGTTCTAGTTAAGGACTTGGAGAGAACCACATGGTTAATTACACAGCTTTCACTGAGGAGTTTCTATTACAGCTGGTAGTCTGTAAGCACTGTTCTATAATCTGATCTATAATCTGATCTATAATCGAATGTTGTAATTTATACTTATATCTTTGATATCTAGGAGGAAAGTGATCCTAGTGGGATGCTGTTGTTACAAGATCATGactacttacttactttatatCAATGCCTATGTAACTGAAATATTTTGTACACTTATGGTGCATATGGTGAAAGTTGTGGTGATTGCTTGTGGTTTACCTGATGTTTACATTTGTTGGGCTGTTCTGCCCTGCAACTGTATTTCAAAGACCAAAGATATGTTGTTGAATGTGATTCTCATGCAGTATTTTCAGCTAAATACAGCTTGTTtgtaaatcattgttttttttatttgttcatcaCTTTCTATTTTCAATAAATCAAGTCCAAATCTGCAAACtg

Function

NR:

description
UPF0711 protein C18orf21 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271396 False 1161 TUCP 0.45 3 26610429 26613182
XM_007258855.3 True 1699 mRNA 0.47 5 26586239 26613188

Neighbor

gene id symbol gene type direction distance location
elp2 elp2 coding upstream 472477 26078650 ~ 26113762 (+)
ctnnal1 ctnnal1,LOC107653856,LOC107670281,LOC107710384 coding upstream 511828 25998229 ~ 26074411 (+)
sla LOC108425730 coding upstream 616887 25959452 ~ 25969352 (+)
LOC103024803 ndrg1a,LOC108425723,LOC107670279,LOC107724345,LOC107710403,LOC107653857,LOC107556406 coding upstream 663828 25907057 ~ 25922411 (+)
LOC103031356 NA coding upstream 698841 25885213 ~ 25887398 (+)
rp9 rp9,LOC107653847,LOC107710715,LOC107556368,LOC107556335,LOC107670274 coding downstream 1956 26615144 ~ 26623597 (+)
LOC103028188 elmo1,LOC108425788,LOC107556397,LOC107556334,LOC107710279,LOC107724338,LOC107702083,LOC108257187 coding downstream 13887 26627075 ~ 26747079 (+)
rbm48 rbm48,LOC107722129,LOC107566766 coding downstream 161703 26774891 ~ 26777801 (+)
fam133b fam133b,LOC107712925 coding downstream 280659 26893847 ~ 26899447 (+)
hepacam2 NA coding downstream 286480 26899668 ~ 26916183 (+)
G199920 NA non-coding upstream 60863 26525135 ~ 26525376 (+)
G199910 NA non-coding upstream 88134 26497451 ~ 26498105 (+)
G199775 NA non-coding upstream 100671 26485236 ~ 26485568 (+)
G199767 NA non-coding upstream 243975 26334716 ~ 26342264 (+)
G199758 gabbr2,LOC106570447 non-coding upstream 452645 26123918 ~ 26133594 (+)
G199965 NA non-coding downstream 170829 26784017 ~ 26788851 (+)
G200051 NA non-coding downstream 620293 27233481 ~ 27234147 (+)
G200102 NA non-coding downstream 666425 27279613 ~ 27279917 (+)
G200110 NA non-coding downstream 680491 27293679 ~ 27294340 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding downstream 718826 27332014 ~ 27335222 (+)
ndufs5 ndufs5 other upstream 966104 25617928 ~ 25620135 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 3716982 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 4363203 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 5203239 21358464 ~ 21383000 (+)
G198815 NA other upstream 5783349 20802371 ~ 20802890 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 218766 26831954 ~ 26892623 (+)
G200104 NA other downstream 671032 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 691333 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 1021491 27634679 ~ 27740109 (+)
G200235 NA other downstream 1202148 27815336 ~ 27818650 (+)

Expression


Co-expression Network