G199965


Basic Information

Item Value
gene id G199965
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26784017 ~ 26788851 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271443
ATGACTTGTAATCTTTAGGGTGTAAAAAAACTCATCTTCTGAGTTCCTTCCTCTTTGCATTTATAATTAAATGCCAGCTAAACTCTGATTAGCATGTGCAAGCTGTCATGCCctacttcctttttgcactctCTGGTTTTATCACTTTTAATCTGGCAATGGTTAATGTTTTACCAGTTAGTGTTTGACCCAGATACTCTTAAAGAGTCATGTGACTTTTTACTACATCACTGAAGAATGTACCTGTTTGTTTTGGATTAGCATGGCGGGCTGTGGAGAAGAAGAACGAATACTCAGTGCTCCCTGCATGCAGCGGGTAGAGGTGCTGTCACAGTGGTAACCATGCGGGCAGCAGTGGATGCCGTCACGACAACACTGACCCTAGAGGAGGAACAGATACAGTTTTAGATCCAGACACTCCAAAACCACAAGACAGATCCAACTGAACCTGCTGAACTGTACCGACATGCTAATGTATACACACCATATTGTAGGGGCAGCAGGCCCACCGTCCATAAGGGGTCCTGCAACACGTTGTACCATCAGGGCAGGTGTAGGAGCTGTCACAATGCACCATGGGGGAAGAGTCATCGGATAACTCCACTACAGTAGCCGAGGGCTTTTCCTCAGTCTcttccacagctttctgaaaagACACAGGGATGTTGT
>TU271444
ATGACTTGTAATCTTTAGGGTGTAAAAAAACTCATCTTCTGAGTTCCTTCCTCTTTGCATTTATAATTAAATGCCAGCTAAACTCTGATTAGCATGTGCAAGCTGTCATGCCctacttcctttttgcactctCTGGTTTTATCACTTTTAATCTGGCAATGGTTAATGTTTTACCAGTTAGTGTTTGACCCAGATACTCTTAAAGAGTCATGTGACTTTTTACTACATCACTGAAGAATGTACCTGTTTGTTTTGGATTAGCATGGCGGGCTGTGGAGAAGAAGAACGAATACTCAGTGCTCCCTGCATGCAGCGGGTAGAGGTGCTGTCACAGTGGTAACCATGCGGGCAGCAGTGGATGCCGTCACGACAACACTGACCCTAGAGGAGGAACAGATACAGTTTTAGATCCAGACACTCCAAAACCACAAGACAGATCCAACTGAACCTGCTGAACTGTACCGACATGCTAATGTATACACACCATATTGTAGGGGCAGCAGGCCCACCGTCCATAAGGGGTCCTGCAACACGTTGTACCATCAGGGCAGGTGTAGGAGCTGTCACAATGCACCATGGGGGAAGAGTCATCGGATAACTCCACTACAGTAGCCGAGGGCTTTTCCTCAGTCTcttccacagctttctgaaaagACACAGGGATGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271443 True 669 lncRNA 0.46 3 26784017 26788851
TU271444 False 669 lncRNA 0.46 3 26784017 26788851

Neighbor

gene id symbol gene type direction distance location
rbm48 rbm48,LOC107722129,LOC107566766 coding upstream 6216 26774891 ~ 26777801 (+)
LOC103028188 elmo1,LOC108425788,LOC107556397,LOC107556334,LOC107710279,LOC107724338,LOC107702083,LOC108257187 coding upstream 36938 26627075 ~ 26747079 (+)
rp9 rp9,LOC107653847,LOC107710715,LOC107556368,LOC107556335,LOC107670274 coding upstream 160420 26615144 ~ 26623597 (+)
elp2 elp2 coding upstream 670255 26078650 ~ 26113762 (+)
ctnnal1 ctnnal1,LOC107653856,LOC107670281,LOC107710384 coding upstream 709606 25998229 ~ 26074411 (+)
fam133b fam133b,LOC107712925 coding downstream 104996 26893847 ~ 26899447 (+)
hepacam2 NA coding downstream 110817 26899668 ~ 26916183 (+)
vps50 vps50,si:ch211-287b5.1,LOC107669849,LOC107722151 coding downstream 132896 26921747 ~ 27131972 (+)
LOC103023978 LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154 coding downstream 518615 27307466 ~ 27331589 (+)
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding downstream 628722 27417573 ~ 27443050 (+)
G199920 NA non-coding upstream 258641 26525135 ~ 26525376 (+)
G199910 NA non-coding upstream 285912 26497451 ~ 26498105 (+)
G199775 NA non-coding upstream 298449 26485236 ~ 26485568 (+)
G199767 NA non-coding upstream 441753 26334716 ~ 26342264 (+)
G199758 gabbr2,LOC106570447 non-coding upstream 650423 26123918 ~ 26133594 (+)
G200051 NA non-coding downstream 444630 27233481 ~ 27234147 (+)
G200102 NA non-coding downstream 490762 27279613 ~ 27279917 (+)
G200110 NA non-coding downstream 504828 27293679 ~ 27294340 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding downstream 543163 27332014 ~ 27335222 (+)
G200125 NA non-coding downstream 567869 27356720 ~ 27356941 (+)
c23h18orf21 LOC103027551 other upstream 170829 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1163882 25617928 ~ 25620135 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 3914760 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 4560981 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 5401017 21358464 ~ 21383000 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 43103 26831954 ~ 26892623 (+)
G200104 NA other downstream 495369 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 515670 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 845828 27634679 ~ 27740109 (+)
G200235 NA other downstream 1026485 27815336 ~ 27818650 (+)

Expression


Co-expression Network