cdk6 (cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946)


Basic Information

Item Value
gene id cdk6
gene name cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26831954 ~ 26892623 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271458
TACATAGCAgtcttttaaacacagtaaatagaCGTTAGTTTTGGCCAGTGCTTCATGTGTGTTATGTAGGTTTTAGAACGTATGTTTGCTCTGAAAGCTGGTGTACCATGAATTTAGTCTGTGTCATGATTTGATGTGGTTGGCACTCACCAATTCATGAAATGTTGCTCGTATTAGGGATTTATGACACTTGCTATATAGTATTTGAATTGTTATTGCtttcttgttttgttatttttcaaaatgtaaGCTCAGTTGTGTTTGACATGacataaaatagattttatgGATATTTCCTTCTAAATAGACGATCCATATCAacttattatatgttatatgagCGAGAAAGGCATGTATCAGCTTTATAACTATCCTAATACGACAAATAAatctaatatatacatttatcatAGGCCACACTTATCAAAATCAAATTGAATGACAGTGGAATAACACAGTAAGAATAAAGTAGATCAATTTTATACCTGCTTACCCGACATACACGCATACGAAATAATGCTGCCTTCAGTGGGTTTACACATTTGATATGGTCAGGCTTTTTATACTATAACAATGAAACCGTTGTTTTATTGCTGCCTTTCCTGCTTATGTCCAGTTTAAAGCTTTGATTAAATGATGTGTCCAATATGTTCTTTATGATCCAAATTCAGCATCAAAGTCATCacagcaccttttttttttttttttcttaggcaGGTGGGTGGGATCTCTGGCGGCGATAAGTTGAATGACAGTGAAAGAGGTGTGGATGGGTTTTGTGATTTTCTCTATTTGTTTTCCCTTTGAACTGGTTGCTGCTAATTTCCCCATAGGTTCCACTCAAATAGACGAGAAAAGAAAGAGGCCCATCTAAATTGGTTcaaatttgatgaaaaatatacaaataaagctGCTTGTGCTGTGTGCCACATGTGTAACTGCctgt
>XM_007259796.3
ACGTCCCTGCTCTGTGTCAGAGCTCTCCGGAGGGGGTCAGGCCACTCTGCGCCAGCGTGGGAAAGCGAAGCGGGAGCCCGCACCCAGCGAAGCCGCGGCCGGGTGCAGAGCCGCGCGCACAGCCGCCTTACTGAAGTAGCGGAGCGAGCGCGATCAGTGCTGCGGCTGCTTTTAGCTACTGGAGCGCGAGGAGGAGATCCGGAGAGGAGGATAGAGaggggaagaggaggaggagaatgaCTAAAGCATGCATGCATCAGCCGACTACCTGTGTGGCCCTCTAGGACACTGGGAGATCTGTGATGTAGGTGAAGAGTCCCAGTGGGGgaaacgcacacacacgcacgcgcgcacacacatacGCCTGCACgcgcgcacgcacgcacgcgcaCCCTCACGcactcgcgcacacacataTGAATACATACAGGCGCAGAGTCTCCTTCGCAGCTCCCCGCAGGCGAACTGAACGGGTAAATCATTTTTAACTCAACATTTCAAGATTACAAGATTTCATTCCTCTATTTCCACGTAAGCGCGCTTTGCGCTTTTTTGTGTAGTCgcgcgcgcgctctctctcgAGTTGCGTTTCATTTATTTCACCGCAGTTGACTTATTGCAAGAACTATTAGCCTGCCGCAAAGCGCGAGCCACGCTTGGAATGCATTCTAAGAAAAGCGCTTTTCGGATTTTGCGCGTTTCCCGTGCGAGCGGGTCGCCGTGACCGGGACGAGCATGCACACGTACGGTGCAAGCGTTTGCTCGCGACAGACAACTCTTATTGCTCCGTTTTTAAGACAATGAGATGAGCGCAGAGCCACGTGCTCGGGCTATTTTTGTGCTGGTGGCACAAAGCAGAGCGCGAGCATCACCGCCGCCGCCAGCGCGGTGTCAGGAGTAAATACAGGGCTAGCAAACTTGCCAGCACTGaactttgtgtttattattgcTGAGCGAGCGGTGGCCTGCTTGTTTTAGTGCTGTGCGCTCCGTTCCTGCTTGTTTCGGCGCTCGCCGGAGAGACCACCAGCCTCGGATGCGACCACCAGTGAGCCAGTGAGCGTGTTTAGGAGCTAACGCATGGGCGCGTGAGGTTGATGCATAAGAAAAACGCTGAAAATCTGTGAGTTTCCTGATGCTCATGGGGTACGTACGATTTCCCTGCCTTCACTAGCTATCTAGCTGGCTGTAGGGGGAATAATCTAGGAATAATCTGGGAATAATCTGAGACTTTGGCCGCTCCAGGGCTCCTTGTGTGGGTGGCTGGAGAGCACGCGGGGAAAGTGCACACTGGATCCAGCCGGCTGCTCTTAAAGAAGTGAGCTCAGCGCTCTTCCCTGCTATCCTGTCCAAGCAGGCAGCGTGAACCAGGCTCTGGGATTCCCCCTGCAATCCTCgcccccctcctccctccctccgcaGCAACAGGCTGCagccgagagagagaggaacacgTGCAAGGAGGAAACTCAACAACATGGACAAAGAAAGCATGATCCAGCAGTACGAGCCCGTGGCCGAGATAGGCGAAGGCGCCTACGGTAAAGTGTACAAGGCACGCGACCTGAAGAACGGGGGTCGCTTCGTGGCCCTAAAGAGAGTGCGGGTCCAGACCGAGGAAGAGGGGATGCCACTGTCCACCATCCGCGAGGTGGCGGTGCTGCGGCAGCTGGAGTCCTTCGAGCATCCTAACGTTGTCAGGTTATTTGATGTCTGTACGGTTTCTAGAACTGATCGGGAGACCAAGCTTACCCTGGTCTTTGAGCACGTGGACCAAGACTTGACTACGTACTTGGAGAAAGCACCTGATCCAGGGGTGCCACCAGAAACAATAAAGGATATGATGTACCAGTTACTACAGGGCCTGGACTTCCTCCACTCTCACCGAGTCGTTCACAGAGACCTGAAGCCTCAGAACATTCTGGTCACCAGCGGAGGTCAGATCAAGCTGGCTGATTTTGGTCTGGCACGCATATACAGCTTTCAGATGGCGCTTACTTCAGTGGTGGTCACACTATGGTATCGAGCTCCAGAAGTGCTGCTGCAGTCCAGCTATGCTACCCCAGTGGATCTGTGGAGTGTGGGCTGCATCTTTGCTGAGATGTTCAGGAGAAGacCCCTTTTCCGTGGGAACTCAGATGTCGACCAGCTAGGCAAGATTTTTGATGTGGTTGGAGTGCCTTCGGTTGAAGACTGGCCCCAGGAAGTGGGCTTGCCTCAGAGTGCCTTCACCCCTCGTCATCCCCAGCCCATCGAGGACCTGGTGCCAGACATGGATGAGCTCGGCAAATCCCTCTTACTCCAATTCCTGGCGTTCAACCCAGCCAGAAGGATATCAGCTTATGAAGCTCTGTCTCACCCATACTTCCAGAGCCTGGACAGCACCAGCAAGAGTCTGTATGCCCAGCCCTTGCCCAGCAAAAAGCCCTCCCTGGAGGAGAGAGCTGCCTGAAACTGaaagactttatttttttcctaccagtttttttttaagactcaCTTTGCCCAAGGCACTGACTCCTAAGCCCTCCCAAACCTTTGAACATGTCTTCCATCACAACATTACATGCTGCTTTTAGGTCTTTTTGAAGTATTACAGCAACTTTTGGTTGATCTGTTTTTACTGCCGCCAGGCAGTACAAGCCCTGTGGTGGGTGAATTCACCCTCTGCCTGGGGCAATTATTAAAACTAACGAAAAACAACGGAAGCTGCTTTCCTGCCTGCCTGTCTTCCCTAACAGGAAGTTCACTGCCAGCTACCTGCTACAGAGGCTGCTACACCACAATACCAGGGATCATTCTGTCTGTCCTACTTCAAGTGTCATTTGGATACAACCTCCAGGTCTCTACTGTCTTTCACTGCTCCGGATCAACAAGCCCAGGTCTCACTGCTACTCACTGACCTGGTCTCACACTTTGGACCCTGCAAACACTTAGAGCTGTCACTGATAATGTGGGTCTGTTGAACAGACCCTGTGTATAAAAGATGTAATCGCACACTCTGCATACACCCTGTATGATAAGttacttatgtttttttttaatgtttttttttaaatggtccaTGGGTTATTATTGGGCCAAATgatttaggtttagtttgaatTGTTCGTCACCTTGAGGTCATTCCCTGCCCAAGGCTGAGGGCTGGGCTTTGTGGACTTTTCCTATCAGCAATTAATGCAGCAATTAATGCTTTCACTGCCTTACAGAGGACAACAAATCATATGACTTCATCATATGATTTAGGTTTTACTCCTCACCACCGTCAAGGCCTTTGTGATACTGCCCACTGTGTTCATCAGCCCAGagagaccaaaaaaactttttatattgTAGGCTGATTTCTGGACACACACTGAGCCTGGTCCCCAATCGCAGGGGCTAGACTTAAACTGTGTCTGGAAAACCAACCCTTAGAGTTCTAGCGAAATGTAACAGCGCATTACATCATAGCCTAATCTAATCTACATAAATTGTTGGTTCTACTTTGTACACTGTtcagttattattgttattatttttttatatcagtgttGATCGTTGACGACTTGTGTCTTTGTGTTcgtgtgtttttattatgtcTTAATTTTAGTTGACTTGAAGGTGTAGGGACTTGTGTtagaaaatgcaaatatttCCAGTGTATGACTTCATACAGAGTGCACCCTGCTGTCAGGGACATGGTGTAGTTGGTAGTTAATAGTTAATAGAGGCtggtaaatgtatgtaaatgtagtTAGAAGGGAGCCCTTCATTGGGCAGCATGTTGATAGTAGAATGAATGGCTATGAAAAAAGCAAGAGGAGATGACTCGACTCTTCGTAGTTAGAGCAGATATTTAGAGAGATAGCTGTAGATGTAAAGTAGAAAGCTTAGATGGTGATCGAGAAGTTAAAGAGGTTAGTTCAGCTGTAAGAAAGGGTTAGAAGGGCAACGTGAAAATTGTATATGACTGCTGGAATTCAGGACGTTGTTGTATGTACAGATTAAACGTCTTGTGTCCGTATAATGTCCTTATAATCTTATTATGAAGATAAGATTATATCCTTCCATATTTAATTTCTCTTAGATGTCAGGGCTAAAATAATAACCCAGCCAGCCTCTTGTCTGGCTCTTCAGATAAGTTTGGAGGAAGTGAGGAAAGAAGAGAAGGAAGGAgcaaaggaaggaaggaaggatgctgctttatatatattttttttacagtgtagtccAGGACTAAGACTAAACTGAGGAGAAGCTGTTTAGTAGTTTTGTCTCGAAGCCTAGGCTGCGGGTGAGGTAGGCTGCATTTCTGTACTTGCCTTCCATGTAATGGAACGCTATTCCAAAACAAAAAGTTAGGAAATGTTCCTTCACATCCCTAATTTTCCCACAGTTTTCTGTACAACGCATGTACAACGCAAATGGGAACAAATCAGCAtcacaaaaacaaagcaaaaatagtatgttttaaaatgtttatttttatcattttaattattataaattcatGTGTTTTGCGTCACAACTGCAAGAGGCTGGATCTTTCTGGTAAAGTCATCCTGAAGCCCCGTTAAACAGTATATATCCGTATCTGTGACCGACAGAATACCAACAAGGAGTCTTCATGGGCAGTCCTGCCAAGGACCCTTCCTACCGTGActgcagcctaggctttggaacGTAGCTACAGGCACTGCATCACAGATCTTAATCCACAGGTTCAGCCAGATAAGCACTGGTGCTTCCTCCATATACTCAGGATTTCAGTAGCGACTCATTGGTTCGTATTTATCAGTTAGCTCGGGGTAGatttttccatatatttttcatatagtTAAACAGCACACATCTGATAAATCTGATCAATACGACTCGCTCTGTCCCACTCTATCCACTCTCAGGTCTATTTATGGTTGTAGTTTTAGATTCAGAACATTTCAGGTTTGACTGCTTGATTGTTATTATAACATTAGTGCATATTAAATGAAGTCTGCAAACTATTCACTCTATATCACCATATTAATGATCCCATattaacagtacagtaaataatgcttaatataTTTATGACTATATTTACACAGATGCTCATCAGATTACTGGTATTTTCATCGAttcattttaacactgtaacaacAAGGCATTCTGGACTCATCTTTTAACtggtaaaaataatgaaaatagtaataataataataatattattaataataataaaagcatgaggcagttctttctctcttctttctgatTGCTGTTGTAACGACTCCTCACACTTTTTATACTGTTAACATTTTTCTCCTTCTTCATTCTTTCAGTCGGCTCCTCATATTCCATATGACATGACGTATTCGTACAGTCATCACAGTGTCGCGTTTTCCTCTTCCAAACAGACGGCAAAAGAGTGGGATGTtatgatgtttaaaataattttcagtGGGCATTAGATGTCACAAAGTACACCTatttgtgtgttaaatgtacagtaaatgtacagtaatttCAGCAACCATTCTTTACCTGTACTCAATTTCACCAGGTTGAAATGGTCTTGAGTTCATCAAGATGGTGTTTTATAATTCTAGCTGAGTTATTAAAGCTTAAAGCTTTGGAATGTAAAATGTTACGCTAGTTATGAAATGTAAACGTTAGCATAGCTATGctgacaaaaaagaaatggcaCCTTGAAAATCACCCATCTCATCCATTGCCCCAAtgtgtaacaaaacaaaaagctttTCCATGAAGTTGTTAAATGCATGAGGGTgatgaaaacaataaataaacagaagtattCCTGTTTGTactcatttactttaaatggaatttaaaatataatcatttgaATTATATTTTACCTTATCAGTCATGACTGTTTTTGAACAAGTATGATATTGCTGGATAGCGGtactttgtgttgtttttgttttatacttttcaGCTCCTTAAAACTTGGCCTCTACTTAAGATGTAGtccctttgttttatttattggcaTTTTGATGGTAATTCTTTGTTATTGTGTGAATGAGAAGAATCAAGCCTGTATAattgggtggtggtggtgtccTAATGGTGCTACAAGTATTGCTTAAACTTGAAAAGATCAAAATATCTTCAAAAAGAACAGCAATAGAGGCATCTTAAGTGtccttttctgcattttttctaTACAAAGCAAAattcaaaattacattttagctAGAATGTTTAAACTGTGGTTTGTATTTTGTACTCCATTGCTGGTTCTCAGCTCCTGGAGAACACTTTGCTATGTTTCAGCTGTTCCCTGTCTTCACCATACTAGATCTATCAGTACTGTTTACTGGTGAGCTGGATCTTAGACCCTGTGTACACCTGATTTTATTGTATACTTATTTTAACCAGTTTTAACCTAGTGCATTTACACTGATTGCAATTATTACTGGAGGattggttgtactgggagggtCAAGGGACTACTCGAAACTGTTAAATGGCAAAGTCCCCAGGAAAACTGTGCTGGAAAAGTCACATGATTTGCCCACCATATAAAGCTGAATTCATATTTCAGATCTTTCATTCTACTGAGTTTccatatttctgtgtattttcagTAGTTCTGAaactaaaatctttttaaaagctGTATCCAGTGTTGATTCTCTGTCAGTTTTTCTCTCACTGCTAACTGCTaatgtttttgtattgttttagtgTGCACCACAAGTATGTATGGGGGTCGAttgtatttctttatatttcacTGGAAAATTGTGCGAACTGTGTCtgtgttaaaatgtttgtaAGGTATTTTCTGTTCCTCCAGCTTTCCACTTTTTATTTCAgaatagtaaacagtaaaatagtCTGTCTTTTttccatcttctttttttttttttttttgcctttttctttcctatttttttctgttctgtggATTTGCCTAATTGATCATTCTGATATTTACTGATCAACAATGTTATTGCTTTTGTCTACATAGCAgtcttttaaacacagtaaatagaCGTTAGTTTTGGCCAGTGCTTCATGTGTGTTATGTAGGTTTTAGAACGTATGTTTGCTCTGAAAGCTGGTGTACCATGAATTTAGTCTGTGTCATGATTTGATGTGGTTGGCACTCACCAATTCATGAAATGTTGCTCGTATTAGGGATTTATGACACTTGCTATATAGTATTTGAATTGTTATTGCtttcttgttttgttatttttcaaaatgtaaGCTCAGTTGTGTTTGACATGacataaaatagattttatgGATATTTCCTTCTAAATAGACGATCCATATCAacttattatatgttatatgagCGAGAAAGGCATGTATCAGCTTTATAACTATCCTAATACGACAAATAAatctaatatatacatttatcatAGGCCACACTTATCAAAATCAAATTGAATGACAGTGGAATAACACAGTAAGAATAAAGTAGATCAATTTTATACCTGCTTACCCGACATACACGCATACGAAATAATGCTGCCTTCAGTGGGTTTACACATTTGATATGGTCAGGCTTTTTATACTATAACAATGAAACCGTTGTTTTATTGCTGCCTTTCCTGCTTATGTCCAGTTTAAAGCTTTGATTAAATGATGTGTCCAATATGTTCTTTATGATCCAAATTCAGCATCAAAGTCATCacagcaccttttttttttttttttcttaggcaGGTGGGTGGGATCTCTGGCGGCGATAAGTTGAATGACAGTGAAAGAGGTGTGGATGGGTTTTGTGATTTTCTCTATTTGTTTTCCCTTTGAACTGGTTGCTGCTAATTTCCCCATAGGTTCCACTCAAATAGACGAGAAAAGAAAGAGGCCCATCTAAATTGGTTcaaatttgatgaaaaatatacaaataaagctGCTTGTGCTGTGTGCCACATGTGTAACTGCctgtcaatgtttttattattttttttctttaaataaatattttagtaagtaaa

Function

symbol description
cdk6 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and regulation of cell cycle. Predicted to act upstream of or within cell dedifferentiation; phosphorylation; and regulation of cell population proliferation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Is expressed in brain; gill; gonad; kidney; and retina. Human ortholog(s) of this gene implicated in high grade glioma; lung non-small cell carcinoma; pancreatic adenocarcinoma; pancreatic ductal carcinoma; and primary autosomal recessive microcephaly 12. Orthologous to human CDK6 (cyclin dependent kinase 6).

NR:

description
PREDICTED: cyclin-dependent kinase 6

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02091 CDK6; cyclin-dependent kinase 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU271458 False 946 lncRNA 0.35 1 26891629 26892574
XM_007259796.3 True 7958 mRNA 0.42 7 26831954 26892623

Neighbor

gene id symbol gene type direction distance location
rbm48 rbm48,LOC107722129,LOC107566766 coding upstream 54153 26774891 ~ 26777801 (+)
LOC103028188 elmo1,LOC108425788,LOC107556397,LOC107556334,LOC107710279,LOC107724338,LOC107702083,LOC108257187 coding upstream 84875 26627075 ~ 26747079 (+)
rp9 rp9,LOC107653847,LOC107710715,LOC107556368,LOC107556335,LOC107670274 coding upstream 208357 26615144 ~ 26623597 (+)
elp2 elp2 coding upstream 718192 26078650 ~ 26113762 (+)
ctnnal1 ctnnal1,LOC107653856,LOC107670281,LOC107710384 coding upstream 757543 25998229 ~ 26074411 (+)
fam133b fam133b,LOC107712925 coding downstream 1224 26893847 ~ 26899447 (+)
hepacam2 NA coding downstream 7045 26899668 ~ 26916183 (+)
vps50 vps50,si:ch211-287b5.1,LOC107669849,LOC107722151 coding downstream 29124 26921747 ~ 27131972 (+)
LOC103023978 LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154 coding downstream 414843 27307466 ~ 27331589 (+)
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding downstream 524950 27417573 ~ 27443050 (+)
G199965 NA non-coding upstream 43103 26784017 ~ 26788851 (+)
G199920 NA non-coding upstream 306578 26525135 ~ 26525376 (+)
G199910 NA non-coding upstream 333849 26497451 ~ 26498105 (+)
G199775 NA non-coding upstream 346386 26485236 ~ 26485568 (+)
G199767 NA non-coding upstream 489690 26334716 ~ 26342264 (+)
G200051 NA non-coding downstream 340858 27233481 ~ 27234147 (+)
G200102 NA non-coding downstream 386990 27279613 ~ 27279917 (+)
G200110 NA non-coding downstream 401056 27293679 ~ 27294340 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding downstream 439391 27332014 ~ 27335222 (+)
G200125 NA non-coding downstream 464097 27356720 ~ 27356941 (+)
c23h18orf21 LOC103027551 other upstream 218766 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1211819 25617928 ~ 25620135 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 3962697 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 4608918 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 5448954 21358464 ~ 21383000 (+)
G200104 NA other downstream 391597 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 411898 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 742056 27634679 ~ 27740109 (+)
G200235 NA other downstream 922713 27815336 ~ 27818650 (+)
LOC103032101 NA other downstream 1085659 27978282 ~ 27987895 (+)

Expression


Co-expression Network