G200110


Basic Information

Item Value
gene id G200110
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27293679 ~ 27294340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271657
gtaaaatataaaaattagtGAGTGTAACAAATATTCACAGTGCAATTCCAATacataggtaaaaaaaataaatgactgaaaaatatatacttcGAAATTCTGTATCTTTAGGCATATGTTAAGTTACATACTGTcattggaaaataaaaaaaatacaatgaaaagagaaaaaaaaaacagtgtacagtgtattcACATTATGTTGAGTATATGGATTTGCTTTCAGAgccttttagattttttacacTTGAGCCAGGGAATCATATCCTTCTTTCAGGTTTTCTTGGGATCAGCTTTCTCCTCATCTTCCCAGGTTTACTCTTTCTAGCACAGACATCCATGCAGCTTTGTTTGGAGACAAAGTTGTTGCTGCTTCCACCACATCCTGTGTATGTGAACTCTTCACATGTTTTTTTGGCGGAGTTGTAATAATATCTTGGTATGGAGGCCGAACATTTCCCCTTATCCAACACACCCTGGCAGATCACAGGAATCACTGTAAAACAAGATCATAAcagattaaaattaatatacagCAACATTTCAAACTTGC

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271657 True 553 lncRNA 0.34 2 27293679 27294340

Neighbor

gene id symbol gene type direction distance location
vps50 vps50,si:ch211-287b5.1,LOC107669849,LOC107722151 coding upstream 161707 26921747 ~ 27131972 (+)
hepacam2 NA coding upstream 377496 26899668 ~ 26916183 (+)
fam133b fam133b,LOC107712925 coding upstream 394232 26893847 ~ 26899447 (+)
rbm48 rbm48,LOC107722129,LOC107566766 coding upstream 515878 26774891 ~ 26777801 (+)
LOC103028188 elmo1,LOC108425788,LOC107556397,LOC107556334,LOC107710279,LOC107724338,LOC107702083,LOC108257187 coding upstream 546600 26627075 ~ 26747079 (+)
LOC103023978 LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154 coding downstream 13126 27307466 ~ 27331589 (+)
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding downstream 123233 27417573 ~ 27443050 (+)
casd1 casd1,LOC106570464,LOC107722141 coding downstream 156669 27451009 ~ 27466504 (+)
ppp1r9a ppp1r9a coding downstream 184396 27478736 ~ 27588721 (+)
trnai-uau_8 NA coding downstream 195703 27490043 ~ 27490136 (+)
G200102 NA non-coding upstream 13762 27279613 ~ 27279917 (+)
G200051 NA non-coding upstream 59532 27233481 ~ 27234147 (+)
G199965 NA non-coding upstream 504828 26784017 ~ 26788851 (+)
G199920 NA non-coding upstream 768303 26525135 ~ 26525376 (+)
G199910 NA non-coding upstream 795574 26497451 ~ 26498105 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding downstream 37674 27332014 ~ 27335222 (+)
G200125 NA non-coding downstream 62380 27356720 ~ 27356941 (+)
G200143 NA non-coding downstream 150554 27444894 ~ 27445449 (+)
G200148 NA non-coding downstream 173020 27467360 ~ 27468802 (+)
G200158 NA non-coding downstream 217648 27511988 ~ 27515678 (+)
G200104 NA other upstream 9112 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 401056 26831954 ~ 26892623 (+)
c23h18orf21 LOC103027551 other upstream 680491 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1673544 25617928 ~ 25620135 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 4424422 22830231 ~ 22869257 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 10181 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 340339 27634679 ~ 27740109 (+)
G200235 NA other downstream 520996 27815336 ~ 27818650 (+)
LOC103032101 NA other downstream 683942 27978282 ~ 27987895 (+)
G200341 LOC108426039 other downstream 899234 28193574 ~ 28196198 (+)

Expression


Co-expression Network