G200143


Basic Information

Item Value
gene id G200143
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27444894 ~ 27445449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271708
tggaatcactcaattctgaggaaaaaagtatggaatcactcaaattgaaggtagaaaataaggacacacccagtcaatttcctttccctaaatggacacctgcctcagattagatctgcttgttagtctgcagttaaaaacacctgcagtcatgactccttggagggctgctggacaaattagagtggcaagaaccatggctccaacaagagaaatgtctcttgaaacaaaatagaggattgtgaaacttcttgaagaaggtaactcttcacgcatggttgctaaatgtgggctgttcacagtcagctgtatccaagatatggaccaaatacaaacagcatggaatggttgttaaagccaagcatactggtagaccgagaaagacatcaaagcgtcaagacaagcaacttaaggccatttgtcttgaaaaccgaaaaagtacaactaaacagatgaagcataaatgggaagaagctggagccaatgtatgtgaccgaaccgtaagaaatcgcctaaaggaaatgggatttcaatacaggaaagctaaaagaaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271708 True 556 lncRNA 0.41 1 27444894 27445449

Neighbor

gene id symbol gene type direction distance location
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding upstream 1844 27417573 ~ 27443050 (+)
LOC103023978 LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154 coding upstream 113305 27307466 ~ 27331589 (+)
vps50 vps50,si:ch211-287b5.1,LOC107669849,LOC107722151 coding upstream 312922 26921747 ~ 27131972 (+)
hepacam2 NA coding upstream 528711 26899668 ~ 26916183 (+)
fam133b fam133b,LOC107712925 coding upstream 545447 26893847 ~ 26899447 (+)
casd1 casd1,LOC106570464,LOC107722141 coding downstream 5560 27451009 ~ 27466504 (+)
ppp1r9a ppp1r9a coding downstream 33287 27478736 ~ 27588721 (+)
trnai-uau_8 NA coding downstream 44594 27490043 ~ 27490136 (+)
trnai-uau_9 NA coding downstream 45488 27490937 ~ 27491030 (+)
asb4 asb4 coding downstream 150409 27595858 ~ 27602040 (+)
G200125 NA non-coding upstream 87953 27356720 ~ 27356941 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding upstream 109672 27332014 ~ 27335222 (+)
G200110 NA non-coding upstream 150554 27293679 ~ 27294340 (+)
G200102 NA non-coding upstream 164977 27279613 ~ 27279917 (+)
G200051 NA non-coding upstream 210747 27233481 ~ 27234147 (+)
G200148 NA non-coding downstream 21911 27467360 ~ 27468802 (+)
G200158 NA non-coding downstream 66539 27511988 ~ 27515678 (+)
G200166 NA non-coding downstream 161024 27606473 ~ 27609051 (+)
G200278 NA non-coding downstream 474006 27919455 ~ 27919995 (+)
G200317 NA non-coding downstream 558085 28003534 ~ 28003890 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 139308 27304521 ~ 27305586 (+)
G200104 NA other upstream 160327 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 552271 26831954 ~ 26892623 (+)
c23h18orf21 LOC103027551 other upstream 831706 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1824759 25617928 ~ 25620135 (+)
dync1i1 dync1i1,LOC107731605 other downstream 189230 27634679 ~ 27740109 (+)
G200235 NA other downstream 369887 27815336 ~ 27818650 (+)
LOC103032101 NA other downstream 532833 27978282 ~ 27987895 (+)
G200341 LOC108426039 other downstream 748125 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 2082614 29528063 ~ 29568075 (+)

Expression


Co-expression Network