G200158


Basic Information

Item Value
gene id G200158
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27511988 ~ 27515678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271737
ATTGTCAGGGTGCGTGAAggagggacgaggagagcggatgcaaatgcgagtgtatttattatacagataacaaaagacaaaaataaacaaataaacggaaactaaacagaaaacaagaaacatggAGAACAGAGACGCAACCAcaacaggctaacaaagcacaagaaccgacacgagggaaagggagcacggactataaatagtgtaacacacacgggaaacagagaacacctggggctaaggggcggagttacaaatgatacacaggtgagggcaagaaacactgaggagcacggatcacgtgggagacacactcacaggcacaagcagagacaggcacagaaaaaggtaaataaacacagaaacacgagaacagacagggaccacgtgacag
>TU271738
ATTGTCAGGGTGCGTGAAggagggacgaggagagcggatgcaaatgcgagtgtatttattatacagataacaaaagacaaaaataaacaaataaacggaaactaaacagaaaacaagaaacatggAGAACAGAGACGCAACCAcaacaggctaacaaagcacaagaaccgacacgagggaaagggagcacggactataaatagtgtaacacacacgggaaacagagaacacctggggctaaggggcggagttacaaatgatacacaggtgagggcaagaaacactgaggagcacggatcacgtgggagacacactcacaggcacaagcagagacaggcacagaaaaaggtaaataaacacagaaacacgagaacagacagggaccacgtgacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271737 True 394 lncRNA 0.46 2 27511988 27515678
TU271738 False 394 lncRNA 0.46 2 27511988 27515678

Neighbor

gene id symbol gene type direction distance location
trnai-uau_9 NA coding upstream 20958 27490937 ~ 27491030 (+)
trnai-uau_8 NA coding upstream 21852 27490043 ~ 27490136 (+)
casd1 casd1,LOC106570464,LOC107722141 coding upstream 45484 27451009 ~ 27466504 (+)
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding upstream 68938 27417573 ~ 27443050 (+)
LOC103023978 LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154 coding upstream 180399 27307466 ~ 27331589 (+)
asb4 asb4 coding downstream 80180 27595858 ~ 27602040 (+)
dlx6 dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660 coding downstream 343446 27859124 ~ 27862168 (+)
ago2 ago2,LOC107722143,LOC107593532 coding downstream 358198 27873876 ~ 27893526 (+)
LOC103030526 LOC103030526 coding downstream 380446 27896124 ~ 27901307 (+)
LOC103030835 NA coding downstream 390503 27906181 ~ 27919226 (+)
G200148 NA non-coding upstream 43186 27467360 ~ 27468802 (+)
G200143 NA non-coding upstream 66539 27444894 ~ 27445449 (+)
G200125 NA non-coding upstream 155047 27356720 ~ 27356941 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding upstream 176766 27332014 ~ 27335222 (+)
G200110 NA non-coding upstream 217648 27293679 ~ 27294340 (+)
G200166 NA non-coding downstream 90795 27606473 ~ 27609051 (+)
G200278 NA non-coding downstream 403777 27919455 ~ 27919995 (+)
G200317 NA non-coding downstream 487856 28003534 ~ 28003890 (+)
G200327 NA non-coding downstream 516173 28031851 ~ 28032098 (+)
G200332 NA non-coding downstream 546692 28062370 ~ 28081260 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 206402 27304521 ~ 27305586 (+)
G200104 NA other upstream 227421 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 619365 26831954 ~ 26892623 (+)
c23h18orf21 LOC103027551 other upstream 898800 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1891853 25617928 ~ 25620135 (+)
dync1i1 dync1i1,LOC107731605 other downstream 119001 27634679 ~ 27740109 (+)
G200235 NA other downstream 299658 27815336 ~ 27818650 (+)
LOC103032101 NA other downstream 462604 27978282 ~ 27987895 (+)
G200341 LOC108426039 other downstream 677896 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 2012385 29528063 ~ 29568075 (+)

Expression


Co-expression Network