G200278


Basic Information

Item Value
gene id G200278
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27919455 ~ 27919995 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271880
aatttttttttactaattataattaagaataattatatatttataaaatttaagaaaaataggtaattggatttatttttttatatagattttatattttatataaaaaaaatagaaaaattagctgttactttgTCTCAATGCCTCTATtgctactgtttttccagtgcagtgggcggggccaagctaatatttcattggtttataaacttgttcgtTGGCTGGTTCCTGGGCCCGTATTTATCAAACTTCTTACAATTGCTCCTAAGAATGCTGCTAAGAATGGACTTAAGTCGAAAATTATTCTTAGTTAAAAGCTGAgactaaaaatgatttattaagcCTCTCAGACTCACTTTAAGCGAAGTGTTGGAATAATTCTCAAGTGTCAGTCTAAGAGCTAATTTACAACACCTATCAGTGCCGCAAAGCGAATTCTGGGATGACGTCATTTCCAAACCCCCGGCAAGAACCAATCACTGCATCGGATTTCAAGTTTAAGATTATTTCCTGAGAAATGTGAAgatcaaagttttaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271880 True 541 lncRNA 0.32 1 27919455 27919995

Neighbor

gene id symbol gene type direction distance location
LOC103030835 NA coding upstream 229 27906181 ~ 27919226 (+)
LOC103030526 LOC103030526 coding upstream 18148 27896124 ~ 27901307 (+)
ago2 ago2,LOC107722143,LOC107593532 coding upstream 25929 27873876 ~ 27893526 (+)
dlx6 dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660 coding upstream 57287 27859124 ~ 27862168 (+)
asb4 asb4 coding upstream 317415 27595858 ~ 27602040 (+)
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding downstream 13383 27933378 ~ 27967499 (+)
LOC103032937 gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601 coding downstream 118753 28038748 ~ 28096817 (+)
tinagl1 tinagl1,LOC107669690,LOC106570498,LOC107706169,LOC107593537,LOC107731519,LOC107591600 coding downstream 210472 28130467 ~ 28176690 (+)
LOC103025163 NA coding downstream 436545 28356540 ~ 28369342 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding downstream 451221 28371216 ~ 28403881 (+)
G200166 NA non-coding upstream 310404 27606473 ~ 27609051 (+)
G200158 NA non-coding upstream 403777 27511988 ~ 27515678 (+)
G200148 NA non-coding upstream 450653 27467360 ~ 27468802 (+)
G200143 NA non-coding upstream 474006 27444894 ~ 27445449 (+)
G200125 NA non-coding upstream 562514 27356720 ~ 27356941 (+)
G200317 NA non-coding downstream 83539 28003534 ~ 28003890 (+)
G200327 NA non-coding downstream 111856 28031851 ~ 28032098 (+)
G200332 NA non-coding downstream 142375 28062370 ~ 28081260 (+)
G200333 NA non-coding downstream 177007 28097002 ~ 28097344 (+)
G200334 NA non-coding downstream 182978 28102973 ~ 28103203 (+)
G200235 NA other upstream 100805 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 179346 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 613869 27304521 ~ 27305586 (+)
G200104 NA other upstream 634888 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 1026832 26831954 ~ 26892623 (+)
LOC103032101 NA other downstream 58287 27978282 ~ 27987895 (+)
G200341 LOC108426039 other downstream 273579 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 1608068 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 1622753 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 3089931 31009926 ~ 31084633 (+)

Expression


Co-expression Network