LOC103032101


Basic Information

Item Value
gene id LOC103032101
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27978282 ~ 27987895 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271914
GTATCTGTTCCAGGGTACATCATTTTCAAATGCAATCTTTTGTGCAGTCCACATGCACACTTCCACTGCCCAAACTGTCCAATGTTATTTCACAAGAAAAACAGATATTTGTATCATCTTCCCAAATGCTTGGGTGGGAAAGAGGTGGGTCACATGGATCATGAAGAGGAGAGCAAAACCCATACAGATATGGGAGAGATGGATGGCCTGGGTGCTTCCAGAGGTGAAGGGGGCCTAGTTATAGTTAAATTAGAAGCTGATCAGTACCTGATGGATCAACAGCCTTATAAAGACGAGATGAGCCAAGATGGATCCGAAGACCAGAATGTGGACTATACTGCTGTAGAACCCGGATACGCTGTTGAAGGGAATGCTGAAGTCTCTGTGGAAACAATGACTAGTGTTGCTCAGATCAGGAGCACCTCAAAGcTGCTTACAGTAATCCAGAGTGGATCTCCCATCGAGCTGGCAAGATGTTTTACTTGTTGTAAAAAATTCCACTGTCCATTTTGCAAGCCAGAGGTTTACAAGCCTACAGTGATGAGCAAATTGAGGAATCACATCGCAGCACATAAAAAGCGGGCTGTGCGTTTTAAAGG
>XM_007259835.3
GGCGGTAGTGGCTCAGAGCGGATGTAGTTCATAGCGGGAAATTACAACAGCAGGAGCAGAAGCAGCGCTACAGGGCGGAGATGGAGAAGCGGCACATAACAATCCAGAGTGGATCTCCCATCAAGAAGGAAAGATCTTTTACCTATTGTAATGAACTGTGCTGTCCACACCCACATTTCCACTGCCAAAACTGTCCGATATTATTTCACacggaaaataagtatttggatCATCTTCCCATGTGCTTAATTGGGAAAGAGGTGGGTCACTCGAGTCACAAAGTggatgaagaagaagaggaggaggaggaggagaagaagaagaacaaaacCCATACAGATGTGCAGGAGCAAGTTGGCCAATTTGAACCCTGCGGTGAAGAGGGCCAAGTTATAGTTAAATTGGAAGATGACCAGGAACAGATGGATCAGCAGCTTCACGAAGAAGAGATGAGTCAGGACGGAGCTGAAAACCAAAAGCTGGACTATACTGCTGTAGAACAAAGTCTTTATGGAGACGCTGGTGAGCAAGGAAATGCTCAGGTGTTTGTGAAAACTATGACTAGTGTTGCTCCGTTCACGAGCACCTCAGAGCCACACATAACAATCCAGAGTGGATCTCCCATCAAGCTGACCAGATGTTTTACCTGTTGTGAAAAATTCCACTGTCCATTTTGCAAACCAGAGGTTTACAAGCCTACAGTGGAGAGCAAACTGAGGAATCACATCGCAGTCCATGAAAAACGGGCTGTGCACTTTAAAGGGTACATCATTTTCAAATGCAATCTTTTGTGCAGTCCACATGCACACTTCCACTGCCCAAACTGTCCAATGTTATTTCACAAGAAAAACAGATATTTGTATCATCTTCCCAAATGCTTGGGTGGGAAAGAGGTGGGTCACATGGATCATGAAGAGGAGAGCAAAACCCATACAGATATGGGAGAGATGGATGGCCTGGGTGCTTCCAGAGGTGAAGGGGGCCTAGTTATAGTTAAATTAGAAGCTGATCAGTACCTGATGGATCAACAGCCTTATAAAGACGAGATGAGCCAAGATGGATCCGAAGACCAGAATGTGGACTATACTGCTGTAGAACCCGGATACGCTGTTGAAGGGAATGCTGAAGTCTCTGTGGAAACAATGACTAGTGTTGCTCAGATCAGGAGCACCTCAAAGcTGCTTACAGTAATCCAGAGTGGATCTCCCATCGAGCTGGCAAGATGTTTTACTTGTTGTAAAAAATTCCACTGTCCATTTTGCAAGCCAGAGGTTTACAAGCCTACAGTGATGAGCAAATTGAGGAATCACATCGCAGCACATAAAAAGCGGGCTGTGCGTTTTAAAGggtacatcatttttaagtgcaatAACCTGTGCAGTCCACACGCACATTTCCACTGCCCAAACTGCCCAAAGATATTTCAcaagaaaaatagatatttggACCATCTTCCTAAATGCTTGGATGGGAAAGAAGTGGGTAACATGGGGCCTGGAGAGGAGGAAGAGCGAAAACCCCATATAGATGTGGCGGAGATGCTTGGCCTGTCTCTTCCCAGAGAGGAAGAGGCCCAAATCCTTAAATTGGAAGATGACCAAGGTGAAGTTGAAGACCAACGTGTGGACCATACTGCTGTAGAACAGAATGTCTGTGGAGATGCTAGTGAGCAATGCAATGCTCAGGTCTTTgcgaaaacaataaaaagtgttGATCAGGTCaggaaaaatgtaagaatattAGTTTCTTGTCCTATGTGCGATATTGTCCTGTAcaaaaagaactttaaaaaacatatggagAGGAAGCACTCAGACATTCTTCTGTTCTGATGTCACCACAAACAGCCGTGTGTAAAGATGTAAGATGTTTTTGATGGCATGTTTGCTGTTCTGAAACATAACATGGGTCAAGCATCACACTCTATGTTCAACAGATGATGTGTGGTAAACACCCACAAGTACTGTGAGAGTCACCTGATTATCAACAAAAAATTGCAAATCTCAGATGCATTAATCTCAATTATGTTACTGTAATGCTACTGTAGAATGCCACTGTGCCTTCTCTAAGAGTGGAAACATTATCTGATATTATCATAGCCAAGCTAAGACCCCTGAATCTGTGAAGCAACTGCAAGATCAATAACAAGAAAGACTTGGAAGTGGAAGTGGAATACTCTGTTCTCCCCAGTATGAAGACCAGGAGAGATGGCCGGCTCTTTTTCTTGAACAAATTTGTCAGGTGTTCTAATTTGGCACCACCCAGGACATGTTGAGAACATTTAGATAAGCCTCTGACAAGTACTCTCCTCGACTGCTTAAAAAACTGTACTGTGGAAAAAGGGTATCCTTTAGTCAAGACATGATCAGCCTCTAGGAAAAGCTTGATGAACAGGTACACTTATCTGCTaaacattgtatttatttttggaagaaaaaataacagaataagaAATATCCCGGATCACATAGATACTGTTAAACATTAAATGTGGCTAAAGGGCTACAAATAAGTGTGGTGGTTATTATCTCTACAGAATGTCTTCTGTTCCAGATTCTCTGTTCTGTTTTGATTTTATCTGACCTTAATTACTACATGAAACCGGGTATATGGAGTTCACCAACAAATACTGTAGTAGATGAGGTCACGTATGCTGAGATTGGCTTTTACTATTCAACAGTAGTTTCAGAACAACACTTTTTTGACAAAGTATTGGGGCTAAATATTATGCTTGTCTCGGTTAAAATGGATGCATATATTCAGCCTGCTCATCCTGCTCATCAATGTTTTTTAAGTCAACTTTTTGTTGTACAAAAccataaaaacctttttttatttgattattattattattattttttgttattttctctcTGTAACTTGTTACCTGTTttaaattagtattattagACTATCTTTGGTTTTGGGGTGAATGCTGTATAGCAGTATTTCTGTTTTCAAGAAGTACCAATCCAGATGATGAAAATGGCTATACTTACTGTATTTGAAGATGATGATGCACCTGCCTTTCTACACAGTCATGAATATTGTCATTGTTCTAAAAGAGACTATTGTTCTCACAGACATTCCACACTTCCTTACTGCCTTTGTCTTTATTTCTGGCTTGTTCTATGTTTTAAATATGGAGATTTCAAAAGAAGATGGGTATGCTTTTAAAGCTATTCAGCACTGAACTGTCAGAACTGTCCACTAATTTGCTCACAGTGTGTCAGAAACTCAAAACAAACTCTAACTCTAAATTCGAAGCTGGTCTTACTTGCTGGTTGGACTAATGTTTTGGTTTAGAAAGGTAcaataaaacatgttcatttaCCA
>XM_007259836.3
GGCGGTAGTGGCTCAGAGCGGATGTAGTTCATAGCGGGAAATTACAACAGCAGGAGCAGAAGCAGCGCTACAGGGCGGAGATGGAGAAGCGGCACATAACAATCCAGAGTGGATCTCCCATCAAGAAGGAAAGATCTTTTACCTATTGTAATGAACTGTGCTGTCCACACCCACATTTCCACTGCCAAAACTGTCCGATATTATTTCACacggaaaataagtatttggatCATCTTCCCATGTGCTTAATTGGGAAAGAGGTGGGTCACTCGAGTCACAAAGTggatgaagaagaagaggaggaggaggaggagaagaagaagaacaaaacCCATACAGATGTGCAGGAGCAAGTTGGCCAATTTGAACCCTGCGGTGAAGAGGGCCAAGTTATAGTTAAATTGGAAGATGACCAGGAACAGATGGATCAGCAGCTTCACGAAGAAGAGATGAGTCAGGACGGAGCTGAAAACCAAAAGCTGGACTATACTGCTGTAGAACAAAGTCTTTATGGAGACGCTGGTGAGCAAGGAAATGCTCAGGTGTTTGTGAAAACTATGACTAGTGTTGCTCCGTTCACGAGCACCTCAGAGCCACACATAACAATCCAGAGTGGATCTCCCATCAAGCTGACCAGATGTTTTACCTGTTGTGAAAAATTCCACTGTCCATTTTGCAAACCAGAGGTTTACAAGCCTACAGTGGAGAGCAAACTGAGGAATCACATCGCAGTCCATGAAAAACGGGCTGTGCACTTTAAAGGGTACATCATTTTCAAATGCAATCTTTTGTGCAGTCCACATGCACACTTCCACTGCCCAAACTGTCCAATGTTATTTCACAAGAAAAACAGATATTTGTATCATCTTCCCAAATGCTTGGGTGGGAAAGAGGTGGGTCACATGGATCATGAAGAGGAGAGCAAAACCCATACAGATATGGGAGAGATGGATGGCCTGGGTGCTTCCAGAGGTGAAGGGGGCCTAGTTATAGTTAAATTAGAAGCTGATCAGTACCTGATGGATCAACAGCCTTATAAAGACGAGATGAGCCAAGATGGATCCGAAGACCAGAATGTGGACTATACTGCTGTAGAACCCGGATACGCTGTTGAAGGGAATGCTGAAGTCTCTGTGGAAACAATGACTAGTGTTGCTCAGATCAGGAGCACCTCAAAGcTGCTTACAGTAATCCAGAGTGGATCTCCCATCGAGCTGGCAAGATGTTTTACTTGTTGTAAAAAATTCCACTGTCCATTTTGCAAGCCAGAGGTTTACAAGCCTACAGTGATGAGCAAATTGAGGAATCACATCGCAGCACATAAAAAGCGGGCTGTGCGTTTTAAAGggtacatcatttttaagtgcaatAACCTGTGCAGTCCACACGCACATTTCCACTGCCCAAACTGCCCAAAGATATTTCAcaagaaaaatagatatttggACCATCTTCCTAAATGCTTGGATGGGAAAGAAGTGGGTAACATGGGGCCTGGAGAGGAGGAAGAGCGAAAACCCCATATAGATGTGGCGGAGATGCTTGGCCTGTCTCTTCCCAGAGAGGAAGAGGCCCAAATCCTTAAATTGGAAGATGACCAAGGTGAAGTTGAAGACCAACGTGTGGACCATACTGCTGTAGAACAGAATGTCTGTGGAGATGCTAGTGAGCAATGCAATGCTCAGGTCTTTgcgaaaacaataaaaagtgttGATCAGGTCaggaaaaatgtaagaatattAGTTTCTTGTCCTATGTGCGATATTGTCCTGTAcaaaaagaactttaaaaaacatatggagAGGAAGCACTCAGACATTCTTCTGTTCTGATGTCACCACAAACAGCCGTGTGTAAAGATGTAAGATGTTTTTGATGGCATGTTTGCTGTTCTGAAACATAACATGGGTCAAGCATCACACTCTATGTTCAACAGATGATGTGTGGTAAACACCCACAAGTACTGTGAGAGTCACCTGATTATCAACAAAAAATTGCAAATCTCAGATGCATTAATCTCAATTATGTTACTGTAATGCTACTGTAGAATGCCACTGTGCCTTCTCTAAGAGTGGAAACATTATCTGATATTATCATAGCCAAGCTAAGACCCCTGAATCTGTGAAGCAACTGCAAGATCAATAACAAGAAAGACTTGGAAGTGGAAGTGGAATACTCTGTTCTCCCCAGTATGAAGACCAGGAGAGATGGCCGGCTCTTTTTCTTGAACAAATTTGTCAGGTGTTCTAATTTGGCACCACCCAGGACATGTTGAGAACATTTAGATAAGCCTCTGACAAGTACTCTCCTCGACTGCTTAAAAAACTGTACTGTGGAAAAAGGGTATCCTTTAGTCAAGACATGATCAGCCTCTAGGAAAAGCTTGATGAACAGATGCACTAAGGCTGGCTGGTCCCGGCAGAGATGCGGCACAACTTTAATGATTTATCTCAGGACAACAAATGTATCCTCATTAACATCCCCTGCTAACAGCAATCAAAACTGGGGAAGTGGTCCTCTTCTGCCGAATCTATTACCGTCAGCCAGATACAGCAGGAGGTGGGAGGTGCAGGGCTGACAGAGTCTCATTAGACTAAACTAATGAAAGACACTGAACACACATTCCAAATCTTACATGTGCTATATCAGCTCTCTGTGAGCTGCACATCTGTATGAGTCATACAACCTACATACAATCATTTAAACACTACAGGCCAAGGTAGTCCTGTGAGGTTAATCaacttaatttgattaatcttatttctcttttagtgtgattcccccccccccccccatcaaaATAGAATTCTTGAGtgcatctttacatatagaaccTATCTGAGAGCATCTCATTAGGTTTATTTCTGACCTGACCTAAAATATAAGTTTTGCAAGTAGTTTAATATAAGAAGCTGCttgacattattttaaaaataactaaattaacttttttaggttgcatacatttttttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271914 False 599 TUCP 0.45 2 27981513 27983350
XM_007259835.3 True 3336 mRNA 0.41 7 27978282 27985958
XM_007259836.3 False 2978 mRNA 0.43 8 27978282 27987895

Neighbor

gene id symbol gene type direction distance location
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding upstream 10783 27933378 ~ 27967499 (+)
LOC103030835 NA coding upstream 59056 27906181 ~ 27919226 (+)
LOC103030526 LOC103030526 coding upstream 76975 27896124 ~ 27901307 (+)
ago2 ago2,LOC107722143,LOC107593532 coding upstream 84756 27873876 ~ 27893526 (+)
dlx6 dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660 coding upstream 116114 27859124 ~ 27862168 (+)
LOC103032937 gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601 coding downstream 50853 28038748 ~ 28096817 (+)
tinagl1 tinagl1,LOC107669690,LOC106570498,LOC107706169,LOC107593537,LOC107731519,LOC107591600 coding downstream 142572 28130467 ~ 28176690 (+)
LOC103025163 NA coding downstream 368645 28356540 ~ 28369342 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding downstream 383321 28371216 ~ 28403881 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding downstream 428621 28416516 ~ 28506486 (+)
G200278 NA non-coding upstream 58287 27919455 ~ 27919995 (+)
G200166 NA non-coding upstream 369231 27606473 ~ 27609051 (+)
G200158 NA non-coding upstream 462604 27511988 ~ 27515678 (+)
G200148 NA non-coding upstream 509480 27467360 ~ 27468802 (+)
G200143 NA non-coding upstream 532833 27444894 ~ 27445449 (+)
G200317 NA non-coding downstream 15639 28003534 ~ 28003890 (+)
G200327 NA non-coding downstream 43956 28031851 ~ 28032098 (+)
G200332 NA non-coding downstream 74475 28062370 ~ 28081260 (+)
G200333 NA non-coding downstream 109107 28097002 ~ 28097344 (+)
G200334 NA non-coding downstream 115078 28102973 ~ 28103203 (+)
G200235 NA other upstream 159632 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 238173 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 672696 27304521 ~ 27305586 (+)
G200104 NA other upstream 693715 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 1085659 26831954 ~ 26892623 (+)
G200341 LOC108426039 other downstream 205679 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 1540168 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 1554853 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 3022031 31009926 ~ 31084633 (+)
G201018 NA other downstream 3024816 31012711 ~ 31015045 (+)

Expression


Co-expression Network