G200317


Basic Information

Item Value
gene id G200317
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28003534 ~ 28003890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271931
gtctctcacacagcagaactgagggcggggctgcgctcatgcagcggctctctatttaaatgaataggatgcgctgtgttggtgccgcgccatttgcgtagcgcgctgcgctatttgcgtagcgcgcgcgggagggatcgtcgatcctctttttgacttcgatactcgagaccatgacctcatttcgattcgatttcgataaaatatcgagatcgtgacacccctaatagtCAGTAACGGAAATGATGCCGGTCATGTACGTGAGTGTTCTGTGGCTAAACAAAGGATATTGAACTAAATTGCTGACACATTTTAAtcaagcagagagagagggaaaacaACAAAGGGAACCAAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271931 True 357 lncRNA 0.49 1 28003534 28003890

Neighbor

gene id symbol gene type direction distance location
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding upstream 36035 27933378 ~ 27967499 (+)
LOC103030835 NA coding upstream 84308 27906181 ~ 27919226 (+)
LOC103030526 LOC103030526 coding upstream 102227 27896124 ~ 27901307 (+)
ago2 ago2,LOC107722143,LOC107593532 coding upstream 110008 27873876 ~ 27893526 (+)
dlx6 dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660 coding upstream 141366 27859124 ~ 27862168 (+)
LOC103032937 gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601 coding downstream 34858 28038748 ~ 28096817 (+)
tinagl1 tinagl1,LOC107669690,LOC106570498,LOC107706169,LOC107593537,LOC107731519,LOC107591600 coding downstream 126577 28130467 ~ 28176690 (+)
LOC103025163 NA coding downstream 352650 28356540 ~ 28369342 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding downstream 367326 28371216 ~ 28403881 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding downstream 412626 28416516 ~ 28506486 (+)
G200278 NA non-coding upstream 83539 27919455 ~ 27919995 (+)
G200166 NA non-coding upstream 394483 27606473 ~ 27609051 (+)
G200158 NA non-coding upstream 487856 27511988 ~ 27515678 (+)
G200148 NA non-coding upstream 534732 27467360 ~ 27468802 (+)
G200143 NA non-coding upstream 558085 27444894 ~ 27445449 (+)
G200327 NA non-coding downstream 27961 28031851 ~ 28032098 (+)
G200332 NA non-coding downstream 58480 28062370 ~ 28081260 (+)
G200333 NA non-coding downstream 93112 28097002 ~ 28097344 (+)
G200334 NA non-coding downstream 99083 28102973 ~ 28103203 (+)
G200349 trioa,LOC107696598,LOC107669652,LOC108426039 non-coding downstream 207962 28211852 ~ 28214348 (+)
LOC103032101 NA other upstream 15639 27978282 ~ 27987895 (+)
G200235 NA other upstream 184884 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 263425 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 697948 27304521 ~ 27305586 (+)
G200104 NA other upstream 718967 27284220 ~ 27284567 (+)
G200341 LOC108426039 other downstream 189684 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 1524173 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 1538858 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 3006036 31009926 ~ 31084633 (+)
G201018 NA other downstream 3008821 31012711 ~ 31015045 (+)

Expression


Co-expression Network