G200341 (LOC108426039)


Basic Information

Item Value
gene id G200341
gene name LOC108426039
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28193574 ~ 28196198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271959
CTTTTTTGGAGAACTTTAAGAAATCCTTGAGCAGAAGCTGGTACTTCATGATTCTCTGTACTGGTTTGATGAGCAGGTCAGTGAGCTGCAGCCTGTGACCCAATCGCTGCTTCAGGTCCTCAAAGTAGGTGTCAATATACTCTGAGACGATGTGTTCAGATTTGGGTTTGTTTTGGCAGTAAACAATGTACATGTGCAACCTCCGCTCttgtTTCACAAACAGAGGGCCCAGATGATCAGGGTCCTCAAGGCACTTCTCCAACTCTCCCAGAAAGAAATCTCTGTGCCAGTCATAGATTTGGTGGATGTTGCCGAACACAATCTTGTCTTTTCCTTTCATGTCATCAGGGACCCCATCCTCCTTCATCCTGGTCATATAGCCCTCAACAACCAGACCAAGATCTCTCACATAGTCCCTCTCTGTCTCAACCAGCTCCAGCAGTATATAGTGGCGTCTCTTGAGGAAGCCCGTCTTACGCTCCTCCATTTCATCAacaggggaggaggaggagaggagggagTTGTCTGAGGGGTTGAAGGAAGGACTGCTGCTGTCCCCTTGCTCCACAGACAGAGAGCTGGGCCTGTCCTCCAGAG

Function

NR:

description
PREDICTED: triple functional domain protein isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271959 True 597 TUCP 0.49 7 28193574 28196198

Neighbor

gene id symbol gene type direction distance location
tinagl1 tinagl1,LOC107669690,LOC106570498,LOC107706169,LOC107593537,LOC107731519,LOC107591600 coding upstream 16884 28130467 ~ 28176690 (+)
LOC103032937 gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601 coding upstream 96757 28038748 ~ 28096817 (+)
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding upstream 226075 27933378 ~ 27967499 (+)
LOC103030835 NA coding upstream 274348 27906181 ~ 27919226 (+)
LOC103030526 LOC103030526 coding upstream 292267 27896124 ~ 27901307 (+)
LOC103025163 NA coding downstream 160342 28356540 ~ 28369342 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding downstream 175018 28371216 ~ 28403881 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding downstream 220318 28416516 ~ 28506486 (+)
jtb jtb coding downstream 311939 28508137 ~ 28513587 (+)
anp32e anp32e,LOC107706176,LOC106569900,LOC107669588 coding downstream 388206 28584404 ~ 28592187 (+)
G200334 NA non-coding upstream 90371 28102973 ~ 28103203 (+)
G200333 NA non-coding upstream 96230 28097002 ~ 28097344 (+)
G200332 NA non-coding upstream 112314 28062370 ~ 28081260 (+)
G200327 NA non-coding upstream 161476 28031851 ~ 28032098 (+)
G200317 NA non-coding upstream 189684 28003534 ~ 28003890 (+)
G200349 trioa,LOC107696598,LOC107669652,LOC108426039 non-coding downstream 15654 28211852 ~ 28214348 (+)
G200371 NA non-coding downstream 196921 28393119 ~ 28394226 (+)
G200389 NA non-coding downstream 404159 28600357 ~ 28602142 (+)
G200391 LOC108426151 non-coding downstream 419918 28616116 ~ 28618054 (+)
G200398 vps45,LOC107670145,LOC107706151,LOC103374652 non-coding downstream 444969 28641167 ~ 28642032 (+)
LOC103032101 NA other upstream 205679 27978282 ~ 27987895 (+)
G200235 NA other upstream 374924 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 453465 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 887988 27304521 ~ 27305586 (+)
G200104 NA other upstream 909007 27284220 ~ 27284567 (+)
lypla2 lypla2,lypa2 other downstream 1331865 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 1346550 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2813728 31009926 ~ 31084633 (+)
G201018 NA other downstream 2816513 31012711 ~ 31015045 (+)
G201207 NA other downstream 3746004 31942202 ~ 31987057 (+)

Expression


Co-expression Network