G200349 (trioa,LOC107696598,LOC107669652,LOC108426039)


Basic Information

Item Value
gene id G200349
gene name trioa,LOC107696598,LOC107669652,LOC108426039
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28211852 ~ 28214348 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU271969
AGCTGAGTGGAGTCTGGTTTGTTCTTGCAGTAGTTCACATACATCTGAAACTTGTCAGCCCATGTGACAAAACAATGGCCCACATCCTCTGGAAGCTGCTCGTACTTCTCCAGCTCTTTCAGGAAGATaTTGTGATGGAATTCATAGAGGTCCTGCATGTTCCCAAAAATGATGTGCTCTTTGTTCACAATGCCTGGAGGGATCTCCTCCACACCGCTGGTCATCTCCCATAGATAGGTATCCATACACTCCCTCAGGTCTCTCACATAGGCCTTCTCAGTCTGTATCAGCTCAGCCATGATGAAGTCCTTTCTGCGAGCAGATTTACGCTTCTCCTCGTTGAGCTCATGGGCAGCATCCCTTAGTTTAACCTCTGAACCTGGGGCACTGGCGGGGATG

Function

symbol description
trioa Predicted to enable ATP binding activity; guanyl-nucleotide exchange factor activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within axon guidance; central nervous system development; and protein phosphorylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability and autosomal dominant non-syndromic intellectual disability 44. Orthologous to human TRIO (trio Rho guanine nucleotide exchange factor).

NR:

description
PREDICTED: triple functional domain protein isoform X11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271969 True 399 lncRNA 0.49 5 28211852 28214348

Neighbor

gene id symbol gene type direction distance location
tinagl1 tinagl1,LOC107669690,LOC106570498,LOC107706169,LOC107593537,LOC107731519,LOC107591600 coding upstream 35162 28130467 ~ 28176690 (+)
LOC103032937 gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601 coding upstream 115035 28038748 ~ 28096817 (+)
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding upstream 244353 27933378 ~ 27967499 (+)
LOC103030835 NA coding upstream 292626 27906181 ~ 27919226 (+)
LOC103030526 LOC103030526 coding upstream 310545 27896124 ~ 27901307 (+)
LOC103025163 NA coding downstream 142192 28356540 ~ 28369342 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding downstream 156868 28371216 ~ 28403881 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding downstream 202168 28416516 ~ 28506486 (+)
jtb jtb coding downstream 293789 28508137 ~ 28513587 (+)
anp32e anp32e,LOC107706176,LOC106569900,LOC107669588 coding downstream 370056 28584404 ~ 28592187 (+)
G200334 NA non-coding upstream 108649 28102973 ~ 28103203 (+)
G200333 NA non-coding upstream 114508 28097002 ~ 28097344 (+)
G200332 NA non-coding upstream 130592 28062370 ~ 28081260 (+)
G200327 NA non-coding upstream 179754 28031851 ~ 28032098 (+)
G200317 NA non-coding upstream 207962 28003534 ~ 28003890 (+)
G200371 NA non-coding downstream 178771 28393119 ~ 28394226 (+)
G200389 NA non-coding downstream 386009 28600357 ~ 28602142 (+)
G200391 LOC108426151 non-coding downstream 401768 28616116 ~ 28618054 (+)
G200398 vps45,LOC107670145,LOC107706151,LOC103374652 non-coding downstream 426819 28641167 ~ 28642032 (+)
G200399 vps45 non-coding downstream 427737 28642085 ~ 28645520 (+)
G200341 LOC108426039 other upstream 15654 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 223957 27978282 ~ 27987895 (+)
G200235 NA other upstream 393202 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 471743 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 906266 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 1313715 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 1328400 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2795578 31009926 ~ 31084633 (+)
G201018 NA other downstream 2798363 31012711 ~ 31015045 (+)
G201207 NA other downstream 3727854 31942202 ~ 31987057 (+)

Expression


Co-expression Network