G200391 (LOC108426151)


Basic Information

Item Value
gene id G200391
gene name LOC108426151
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28616116 ~ 28618054 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU272031
TTCATTTCTATAATATAGTAAAAAGTTACAATGTACAAATTCACATTAGGGCCAAGTGGCCTATGCATGACAACATCACCACAGGGTTTGTGCCTGTCTAGATCGTGGACAGATCTGACCTAGAACTGAATCTCGCTGCTCAAAAACTCACACACTCTGTAAAACAGATTTAACCTTAAGGGcaactgtaaaaaaagtatGGCACAGACCTGTGAGGTTCACTGAGAGTGGTGTAACAAAAAATCCTTTGTtaacaacagcaaaaaagttgacttttaacattaaatgagaaatggtacAACTTTCAGTAAAATTACAGTCATTTACAGGGCAAAGTCGAGGGACTGGAGTGTATAATGCTGTGTAGAGAAACTTTAGTGGGGAAGACAGTAATAAAAAAGTTCCCAGTgcatttcatgtattttttgtgcattatcaGGTCAATTGTTGGCAATAGAGTCATTTAAAGCCCTGTGACTGGCTATTGGGGCATCAGAGGCTTTCAAGTTTGTCGTCCTTCGAGGGTGTAGATGGAGCTGCAGTCTTGCTGTTCTCTGCTTGCTGCTGTCTGGCCTGCAGCTCTCTCACCTCTGCTAGAACCTCCCGTGCCTCCTCCCAGGCGGAGAGAGCTTCCTGCAGCAGACGCTCAGCTGCTGTCCTCCTGCTCTCCCAGTCCAGCATGTCACCGAGAGGAGAGTCCGTGCCCTTTGGTCCTTTAAAATGAGGCGAACTGGAAAGCCACAAACTGGGCGAGTCTACACCCTTTAAATGGGGTGAACTGGAGCCGGCAGAAAGAGGTGAGTCTGTGCTCTTGATGTGGGTCAGGTCAATGCAATGCTTCAtatggggtgagctggagctctTTGAATCGGGCGAGTCGATGCTTTTTGAACGAAAGTTGGCCTTGGAGTGAGATGACTTTGAGGACTTTGAAGAAGGAGAATCCTTGGCTTTGACCCGAGGGGAATCCTTGTGCTTTGAGCTTGGGGAATCTTTTGTCTTCAGCTGAGGAGAAGAGTCTACGCTTTTGCCGTGAGTCGAGCTGTGAGAGCTGGAGCTTTTAGAGTGGGGCGACTCGGAGCCCTTTAAGTGTCGCAGTCTTGGGGAATCAACGCCCCTCAAATGGGTGTAGGAGCCCATTCGGCCCCTAATGGGCTCTTGCTCCTGGACCTTGGCCAGTAACTCCTGGGTCCTCTGCAGCCGCTGGTTGATGAGGTCCTGCAGGTGGCTCGTTGGACTCTGGGACAGCACGGCCTGCCGACTGAGGTCATCCCTTTTGGTCGGCCTCCGTTCTCCACGGGATAAAGCATCGTCCATGGAGCCGCAGCGACTCCTGCCCTGAGCAAACAGCTTTTTGCCAGGCTGAGGTGTGTGGGTCTGGCTCTGCTGGCTCCAGGAGAGTTCGCTCCCCCGGGGAAGGCTGCTGGTCTTCACCTTGGCCTCCACAGGGGTCACTCGGGGTCTGGAGACATCAGTGCCGGCTCGTTTCCGTCCAGGGGCTAAAACGTCTAGGTTTCCTCGATGGTCCTTCACCCACACAGCATAGTCCTCATCCAGCATGCTGGCATCCTCCTCATGCACCAGGTCCAGAGTCAGCATCCCATCTGAAGAGGTTGAGGCCTGAAGATGGAACATTAACATTCTCAGATTGGTGTGTGAACCCATTAAGTTAATCAGTCATTCAAATATGTTACTGAAATGATCATTTGGCCTTCAGTTTtgagtattttaatattatttacagaGATCAGAGTCTGGTCATGAATGGCTGGAAATAAGAATCGGAAAGATGAACACCAAGTGTACATGTTGGTTTTTAGATTTTTCCCCACTAATGCCATAATATGACCCTCCTCCGCTtacagcaaaaaatataaaaagctgaTTAACTTGATCTGTGATGCCATGTTGAGTATTG

Function

NR:

description
PREDICTED: pleckstrin homology domain-containing family O member 1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272031 True 1918 lncRNA 0.49 2 28616116 28618054

Neighbor

gene id symbol gene type direction distance location
anp32e anp32e,LOC107706176,LOC106569900,LOC107669588 coding upstream 23929 28584404 ~ 28592187 (+)
jtb jtb coding upstream 102529 28508137 ~ 28513587 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding upstream 109630 28416516 ~ 28506486 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding upstream 212235 28371216 ~ 28403881 (+)
LOC103025163 NA coding upstream 246774 28356540 ~ 28369342 (+)
LOC103028128 NA coding downstream 39266 28657320 ~ 28672447 (+)
LOC103028750 LOC108424743 coding downstream 63017 28681071 ~ 28699780 (+)
crtap crtap,LOC107593591,LOC107706152,LOC107670137,LOC107742876,LOC107591617,LOC106588754 coding downstream 129033 28747087 ~ 28755459 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511 coding downstream 166588 28784642 ~ 28802718 (+)
clasp2 clasp2 coding downstream 190275 28808329 ~ 28874267 (+)
G200389 NA non-coding upstream 13974 28600357 ~ 28602142 (+)
G200371 NA non-coding upstream 221890 28393119 ~ 28394226 (+)
G200349 trioa,LOC107696598,LOC107669652,LOC108426039 non-coding upstream 401768 28211852 ~ 28214348 (+)
G200334 NA non-coding upstream 512913 28102973 ~ 28103203 (+)
G200333 NA non-coding upstream 518772 28097002 ~ 28097344 (+)
G200398 vps45,LOC107670145,LOC107706151,LOC103374652 non-coding downstream 23113 28641167 ~ 28642032 (+)
G200399 vps45 non-coding downstream 24031 28642085 ~ 28645520 (+)
G200386 vps45,LOC107593545,LOC106588336 non-coding downstream 29215 28647269 ~ 28649448 (+)
G200402 psmb4,LOC107731773,LOC107669568,LOC107591614,LOC107593590,LOC107696528 non-coding downstream 54830 28672884 ~ 28679162 (+)
G200482 LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586 non-coding downstream 85724 28703778 ~ 28745324 (+)
G200341 LOC108426039 other upstream 419918 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 628221 27978282 ~ 27987895 (+)
G200235 NA other upstream 797466 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 876007 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 1310530 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 910009 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 924694 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2391872 31009926 ~ 31084633 (+)
G201018 NA other downstream 2394657 31012711 ~ 31015045 (+)
G201207 NA other downstream 3324148 31942202 ~ 31987057 (+)

Expression


Co-expression Network