G200398 (vps45,LOC107670145,LOC107706151,LOC103374652)


Basic Information

Item Value
gene id G200398
gene name vps45,LOC107670145,LOC107706151,LOC103374652
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28641167 ~ 28642032 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU272040
CCCGAAGAGAGCTTGGCCCAAGATAGGGGAACTGACTGTCTTTTAAACGGCCTTTAATCAGCTGATCCAGTGTGTCATGCAGCAGGGGCTGGTGTTGTGTGTAGACATTCTCCACACCCTTTAGTCctttaaaaaactgtttagtGATGGCCACGGCATCTGTAGCAGTAATAAGATCAGTTCCTCTGACCCGTTTTCCTCCATAGTCAATCATGGCCTGTACCATcTTGCAGTGTTTTTCAGACACTCCTCTCCTGTTGAGCTCATCCATGAGGCTGGGCAGCATGCTACTGCTGTGTCTCTCGTAGCGCAGAGCGTAGAGC

Function

symbol description
vps45 Acts upstream of or within regulation of lens fiber cell differentiation. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in severe congenital neutropenia 5. Orthologous to human VPS45 (vacuolar protein sorting 45 homolog).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 45

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272040 True 323 lncRNA 0.50 3 28641167 28642032

Neighbor

gene id symbol gene type direction distance location
anp32e anp32e,LOC107706176,LOC106569900,LOC107669588 coding upstream 48980 28584404 ~ 28592187 (+)
jtb jtb coding upstream 127580 28508137 ~ 28513587 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding upstream 134681 28416516 ~ 28506486 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding upstream 237286 28371216 ~ 28403881 (+)
LOC103025163 NA coding upstream 271825 28356540 ~ 28369342 (+)
LOC103028128 NA coding downstream 15288 28657320 ~ 28672447 (+)
LOC103028750 LOC108424743 coding downstream 39039 28681071 ~ 28699780 (+)
crtap crtap,LOC107593591,LOC107706152,LOC107670137,LOC107742876,LOC107591617,LOC106588754 coding downstream 105055 28747087 ~ 28755459 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511 coding downstream 142610 28784642 ~ 28802718 (+)
clasp2 clasp2 coding downstream 166297 28808329 ~ 28874267 (+)
G200391 LOC108426151 non-coding upstream 23113 28616116 ~ 28618054 (+)
G200389 NA non-coding upstream 39025 28600357 ~ 28602142 (+)
G200371 NA non-coding upstream 246941 28393119 ~ 28394226 (+)
G200349 trioa,LOC107696598,LOC107669652,LOC108426039 non-coding upstream 426819 28211852 ~ 28214348 (+)
G200334 NA non-coding upstream 537964 28102973 ~ 28103203 (+)
G200399 vps45 non-coding downstream 53 28642085 ~ 28645520 (+)
G200386 vps45,LOC107593545,LOC106588336 non-coding downstream 5237 28647269 ~ 28649448 (+)
G200402 psmb4,LOC107731773,LOC107669568,LOC107591614,LOC107593590,LOC107696528 non-coding downstream 30852 28672884 ~ 28679162 (+)
G200482 LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586 non-coding downstream 61746 28703778 ~ 28745324 (+)
G200488 NA non-coding downstream 84033 28726065 ~ 28728956 (+)
G200341 LOC108426039 other upstream 444969 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 653272 27978282 ~ 27987895 (+)
G200235 NA other upstream 822517 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 901058 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 1335581 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 886031 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 900716 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2367894 31009926 ~ 31084633 (+)
G201018 NA other downstream 2370679 31012711 ~ 31015045 (+)
G201207 NA other downstream 3300170 31942202 ~ 31987057 (+)

Expression


Co-expression Network