G200482 (LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586)


Basic Information

Item Value
gene id G200482
gene name LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28703778 ~ 28745324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU272154
atccaaCATTCAGCATTCAGACATATCCACACCAGTGCTTCTTGCTTATAGAATCACTGAAGCTGCataacacaaacaaaataatgcAGTACATATGGCTTCATATGGCAACTTTGGTGAAATGGATATACAGCAGTTTAATTGTGGCACAATTATGTACAATTATCAAATATGTGAATAAAGATGTTTAGCAGAACACTTACAGCATGAAATCAAGCATTTTCCTCTTGTGCTTATTGAAATAAAACTCAGCTGCTGTAATCATGTGTGCACACAGGGCTCTCGCGCTCTGAGTGCTTGTGTGTATTAAAGCGCACTTTAGGCAAGGGTCACATATGTAGCATCAGTGGTCACTCCACAGTTGTTGTCTTTCATAGACATGAGCACATAGCCATCGTTTCCCCAGTAAGTGGACCAGGAGTTCTTCACTAGCCAGTAAGGCTGTCCGTCCAGAACCCCGTAACCCACCGCCAGCACAGCATGATCCAGGTCATCCGGCCCATTctTGCAGGCAGGTTCATAATACACTCCGTTACTGTAGAAGGTGAAGGAGCGGTGAGCAGCGTCGATGCTGACTGCAGTGGGGCCGTTTTTAAACAGTGCAACCTTCAGAGCCTCTGCATCACCGCTGGTCACATTTGTGTAACTCTTGACGCGAGCAGTCAGCTGGGATGAGTTATAGTGACACAGGCCATTcatGCCAGTGTAAGATCCATAGCTCTCTGCAGTGGAGATGCCACCGTGTTTCATGACCCATTCATATGCTCTCCACTCCTCTCCTCCATCACACCCATTATTACCAAAACCCCACGTGCAGTCCACCAGCATCTGCTGAGACAACACCACCCGCTCTCCTGtCTTTAGAAACAATGCTCCTTCAAGTGCACCAGTTGTGGCAAAACTCCAGCAAGACCCACACACAGCCTGGTCCTTAACAGGGGTCACAGCACCATAAAGCCTCCAGTCCAGAGAGTCAGGCGGGGCGACAGAGCGGAGCTCAGAGGGGAAAGGCAGACCATTGTTTGGGGTCTTGCTCCCTTGTCTTCCCCTCATTACAGCCATTTCATCCTGAGAGCGATCAGCCAGATgattgacagagagagagaatgacaggCCTGCTCTGTTCATAGAGTGAACATACCGAATGTTATGTACAAAGTTGTGCTCTCGTTTCTCATGCTCCTTCTCAGTTTCATAGCTGCGATCATATTTCTCCTTAAAGTGCCCAAACAGCCGATGGGCGTGGCCAACAGGAGAGGTATGAATTAGGTCTTGAATGGGATTGGCAATAAGCCGGTGCTCGGCCCCTGGACCAGGAAACGGGCCGCACCCCATACCATCTGGTAAGCTGAAGTCCTTAGGGTCAGTTTGTGGGCTGAAGTCACTGTAGTCGATGAGGTATTTGTCGTAGTGGGAGCCAAGCAGGGTGTTGTAGCCCATCATTTCATAGTGTTGGGGTGTGGCCACTGAAGCGCCTCCCTCTGGACGGGTCACCCACAGACGGTAAGTGTTCTTTTTATGTCCGATAGTAGTGATGTTCTTCCACACCTCACACAGAACACCTGCGTAATACTCCA
>TU272156
atccaaCATTCAGCATTCAGACATATCCACACCAGTGCTTCTTGCTTATAGAATCACTGAAGCTGCataacacaaacaaaataatgcAGTACATATGGCTTCATATGGCAACTTTGGTGAAATGGATATACAGCAGTTTAATTGTGGCACAATTATGTACAATTATCAAATATGTGAATAAAGATGTTTAGCAGAACACTTACAGCATGAAATCAAGCATTTTCCTCTTGTGCTTATTGAAATAAAACTCAGCTGCTGTAATCATGTGTGCACACAGGGCTCTCGCGCTCTGAGTGCTTGTGTGTATTAAAGCGCACTTTAGGCAAGGGTCACATATGTAGCATCAGTGGTCACTCCACAGTTGTTGTCTTTCATAGACATGAGCACATAGCCATCGTTTCCCCAGTAAGTGGACCAGGAGTTCTTCACTAGCCAGTAAGGCTGTCCGTCCAGAACCCCGTAACCCACCGCCAGCACAGCATGATCCAGGTCATCCGGCCCATTctTGCAGGCAGGTTCATAATACACTCCGTTACTGTAGAAGGTGAAGGAGCGGTGAGCAGCGTCGATGCTGACTGCAGTGGGGCCGTTTTTAAACAGTGCAACCTTCAGAGCCTCTGCATCACCGCTGGTCACATTTGTGTAACTCTTGACGCGAGCAGTCAGCTGGGATGAGTTATAGTGACACAGGCCATTcatGCCAGTGTAAGATCCATAGCTCTCTGCAGTGGAGATGCCACCGTGTTTCATGACCCATTCATATGCTCTCCACTCCTCTCCTCCATCACACCCATTATTACCAAAACCCCACGTGCAGTCCACCAGCATCTGCTGAGACAACACCACCCGCTCTCCTGtctgagaaaaagaaataaatacagttaataCAGGCTATTACAAGGTAACATGcctcatttaaatgttttttc
>TU272159
atccaaCATTCAGCATTCAGACATATCCACACCAGTGCTTCTTGCTTATAGAATCACTGAAGCTGCataacacaaacaaaataatgcAGTACATATGGCTTCATATGGCAACTTTGGTGAAATGGATATACAGCAGTTTAATTGTGGCACAATTATGTACAATTATCAAATATGTGAATAAAGATGTTTAGCAGAACACTTACAGCATGAAATCAAGCATTTTCCTCTTGTGCTTATTGAAATAAAACTCAGCTGCTGTAATCATAAACAATACA

Function

NR:

description
PREDICTED: digestive cysteine proteinase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272154 True 1577 lncRNA 0.49 7 28703778 28713345
TU272156 False 929 lncRNA 0.45 3 28703778 28710833
TU272159 False 275 lncRNA 0.34 2 28703778 28745324

Neighbor

gene id symbol gene type direction distance location
LOC103028750 LOC108424743 coding upstream 3998 28681071 ~ 28699780 (+)
LOC103028128 NA coding upstream 31331 28657320 ~ 28672447 (+)
anp32e anp32e,LOC107706176,LOC106569900,LOC107669588 coding upstream 111591 28584404 ~ 28592187 (+)
jtb jtb coding upstream 190191 28508137 ~ 28513587 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding upstream 197292 28416516 ~ 28506486 (+)
crtap crtap,LOC107593591,LOC107706152,LOC107670137,LOC107742876,LOC107591617,LOC106588754 coding downstream 1763 28747087 ~ 28755459 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511 coding downstream 39318 28784642 ~ 28802718 (+)
clasp2 clasp2 coding downstream 63005 28808329 ~ 28874267 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding downstream 132246 28877570 ~ 28904102 (+)
pdcd6ip pdcd6ip,LOC107742851,LOC107591619,LOC107696546,LOC107706184,LOC107669307 coding downstream 161198 28906522 ~ 28921254 (+)
G200402 psmb4,LOC107731773,LOC107669568,LOC107591614,LOC107593590,LOC107696528 non-coding upstream 24616 28672884 ~ 28679162 (+)
G200386 vps45,LOC107593545,LOC106588336 non-coding upstream 54330 28647269 ~ 28649448 (+)
G200399 vps45 non-coding upstream 58258 28642085 ~ 28645520 (+)
G200398 vps45,LOC107670145,LOC107706151,LOC103374652 non-coding upstream 61746 28641167 ~ 28642032 (+)
G200391 LOC108426151 non-coding upstream 85724 28616116 ~ 28618054 (+)
G200511 NA non-coding downstream 24810 28770134 ~ 28782034 (+)
G200628 NA non-coding downstream 273249 29018573 ~ 29019097 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding downstream 716837 29462161 ~ 29467527 (+)
G200785 NA non-coding downstream 739616 29484940 ~ 29485686 (+)
G200799 NA non-coding downstream 847696 29593020 ~ 29593537 (+)
G200341 LOC108426039 other upstream 507580 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 715883 27978282 ~ 27987895 (+)
G200235 NA other upstream 885128 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 963669 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 1398192 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 782739 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 797424 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2264602 31009926 ~ 31084633 (+)
G201018 NA other downstream 2267387 31012711 ~ 31015045 (+)
G201207 NA other downstream 3196878 31942202 ~ 31987057 (+)

Expression


Co-expression Network