G200511


Basic Information

Item Value
gene id G200511
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28770134 ~ 28782034 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU272200
gacagacagacagACGGACGGACTGAGGCGCGCGCCGCCGCGCTGCGGTAGCTCGAACGGAAGGGAGAGACGCGCGCGGGGAATCGAAGCGGACCGGGCTCAGCCCGTGCGCTGTTGTCGTCGACGACGCAGACGACGTcgtgttgctgctgctgtggtgGGAGTTAACGGCGCCGCGGAGATGAACGGCATCGCCAAGGGCAGGTTTGAGGTAAGGCTGCGCgcgagagggagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272200 True 235 lncRNA 0.68 2 28770134 28782034

Neighbor

gene id symbol gene type direction distance location
crtap crtap,LOC107593591,LOC107706152,LOC107670137,LOC107742876,LOC107591617,LOC106588754 coding upstream 14675 28747087 ~ 28755459 (+)
LOC103028750 LOC108424743 coding upstream 70354 28681071 ~ 28699780 (+)
LOC103028128 NA coding upstream 97687 28657320 ~ 28672447 (+)
anp32e anp32e,LOC107706176,LOC106569900,LOC107669588 coding upstream 177947 28584404 ~ 28592187 (+)
jtb jtb coding upstream 256547 28508137 ~ 28513587 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511 coding downstream 2608 28784642 ~ 28802718 (+)
clasp2 clasp2 coding downstream 26295 28808329 ~ 28874267 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding downstream 95536 28877570 ~ 28904102 (+)
pdcd6ip pdcd6ip,LOC107742851,LOC107591619,LOC107696546,LOC107706184,LOC107669307 coding downstream 124488 28906522 ~ 28921254 (+)
arpp21 NA coding downstream 150282 28932316 ~ 28952514 (+)
G200482 LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586 non-coding upstream 24810 28703778 ~ 28745324 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 31808 28736851 ~ 28738326 (+)
G200488 NA non-coding upstream 41178 28726065 ~ 28728956 (+)
G200402 psmb4,LOC107731773,LOC107669568,LOC107591614,LOC107593590,LOC107696528 non-coding upstream 90972 28672884 ~ 28679162 (+)
G200386 vps45,LOC107593545,LOC106588336 non-coding upstream 120686 28647269 ~ 28649448 (+)
G200628 NA non-coding downstream 236539 29018573 ~ 29019097 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding downstream 680127 29462161 ~ 29467527 (+)
G200785 NA non-coding downstream 702906 29484940 ~ 29485686 (+)
G200799 NA non-coding downstream 810986 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 854087 29636121 ~ 29640007 (+)
G200341 LOC108426039 other upstream 573936 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 782239 27978282 ~ 27987895 (+)
G200235 NA other upstream 951484 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1030025 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 1464548 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 746029 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 760714 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2227892 31009926 ~ 31084633 (+)
G201018 NA other downstream 2230677 31012711 ~ 31015045 (+)
G201207 NA other downstream 3160168 31942202 ~ 31987057 (+)

Expression


Co-expression Network