Gene
RNA
| Item | Value |
|---|---|
| gene id | G63134 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000010 |
| NCBI id | null |
| chromosome length | 12265998 |
| location | 4901433 ~ 4901642 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: LOW QUALITY PROTEIN: organic solute transporter subunit alpha-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU71920 | True | 210 | lncRNA | 0.39 | 1 | 4901433 | 4901642 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000010_04871254_04873119 | DMRTA2, DMRT5 | coding | upstream | 27515 | 4870540 ~ 4873918 (+) |
| CI01000010_04803003_04849985 | FAF1 | coding | upstream | 51448 | 4803003 ~ 4849985 (+) |
| CI01000010_04753467_04770912 | RNF11L2, RNF11B, RNF11 | coding | upstream | 129759 | 4753231 ~ 4771674 (+) |
| CI01000010_04735645_04749008 | TTC39A | coding | upstream | 152209 | 4735645 ~ 4749224 (+) |
| CI01000010_04696294_04717129 | EPS15 | coding | upstream | 184211 | 4696294 ~ 4717222 (+) |
| CI01000010_04934550_04955403 | NA | coding | downstream | 32214 | 4933856 ~ 4956630 (+) |
| CI01000010_05012978_05018219 | NA | coding | downstream | 109737 | 5011379 ~ 5018346 (+) |
| CI01000010_05047527_05065421 | NA | coding | downstream | 145885 | 5047527 ~ 5066870 (+) |
| CI01000010_05185530_05200227 | NA | coding | downstream | 283479 | 5185121 ~ 5200514 (+) |
| CI01000010_05238328_05242974 | NA | coding | downstream | 335387 | 5237029 ~ 5243396 (+) |
| G63131 | NA | non-coding | upstream | 21912 | 4879024 ~ 4879521 (+) |
| G63096 | NA | non-coding | upstream | 127734 | 4772221 ~ 4773699 (+) |
| G63058 | NA | non-coding | upstream | 310294 | 4590169 ~ 4591139 (+) |
| G63078 | NA | non-coding | upstream | 328939 | 4572277 ~ 4572494 (+) |
| G63070 | NA | non-coding | upstream | 344134 | 4556992 ~ 4557299 (+) |
| G63149 | NA | non-coding | downstream | 44823 | 4946465 ~ 4946668 (+) |
| G63151 | NA | non-coding | downstream | 51900 | 4953542 ~ 4953763 (+) |
| G63162 | NA | non-coding | downstream | 81974 | 4983616 ~ 4992490 (+) |
| CI01000010_04640858_04683752 | OSBPL9 | other | upstream | 247440 | 4640516 ~ 4683778 (+) |
| G62983 | NA | other | upstream | 452106 | 4448172 ~ 4449327 (+) |
| G62856 | NA | other | upstream | 961488 | 3937757 ~ 3939945 (+) |
| G62838 | NA | other | upstream | 1007640 | 3890095 ~ 3893793 (+) |
| CI01000010_03320340_03346243 | NA | other | upstream | 1570247 | 3313695 ~ 3347796 (+) |
| G63403 | NA | other | downstream | 793803 | 5695445 ~ 5707085 (+) |
| G63405 | NA | other | downstream | 806329 | 5707971 ~ 5717250 (+) |
| CI01000010_05789479_05790006 | NA | other | downstream | 855311 | 5788332 ~ 5790204 (+) |
| G63524 | NA | other | downstream | 1472916 | 6374558 ~ 6374667 (+) |
| G63572 | NA | other | downstream | 1684286 | 6585928 ~ 6617806 (+) |
