G200628


Basic Information

Item Value
gene id G200628
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29018573 ~ 29019097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU272429
tataaagcgcctcaactctggaataatctccccgaatatgttcgggactcagacacagtctcaatctttaagtctagactgaaaacttacttgtttagtttagcttttggtaattaatgttttttcctttagataaggctgcagattcaggggttcatggacagaggaaattgtggtaaactgagatgctggtgctgttgttctcccactgcacacggtcactcaggtttgtggacggtggagtgggtggatgccagtgtttcagggagcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttattcagttctgccggagtcatttgccacactctgataatgttttaatattctcagttttgcataaatccagtcaaaactaattccatctctctgctttcctccgagttactgactgcccacctgtctgacccgataccgatgttggaccctcaggctctcgcgtctcctgtccggccagactgatggaagtttctgaagtcagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272429 True 525 lncRNA 0.46 1 29018573 29019097

Neighbor

gene id symbol gene type direction distance location
snrnp40 snrnp40,LOC107591625,LOC107593559 coding upstream 3570 29006555 ~ 29015003 (+)
LOC103031913 fabp3,LOC107591627,LOC108426441,LOC107742844,LOC107696578,LOC107669374 coding upstream 20088 28994884 ~ 28998485 (+)
arpp21 NA coding upstream 66059 28932316 ~ 28952514 (+)
pdcd6ip pdcd6ip,LOC107742851,LOC107591619,LOC107696546,LOC107706184,LOC107669307 coding upstream 97319 28906522 ~ 28921254 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding upstream 114471 28877570 ~ 28904102 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding downstream 2078 29021175 ~ 29034378 (+)
pum1 pum1,LOC107593563 coding downstream 20274 29039371 ~ 29064155 (+)
sdc3 sdc3 coding downstream 51367 29070464 ~ 29127531 (+)
LOC103034894 NA coding downstream 109985 29129082 ~ 29136349 (+)
LOC103035215 NA coding downstream 119328 29138425 ~ 29149837 (+)
G200511 NA non-coding upstream 236539 28770134 ~ 28782034 (+)
G200482 LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586 non-coding upstream 273249 28703778 ~ 28745324 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 280247 28736851 ~ 28738326 (+)
G200488 NA non-coding upstream 289617 28726065 ~ 28728956 (+)
G200402 psmb4,LOC107731773,LOC107669568,LOC107591614,LOC107593590,LOC107696528 non-coding upstream 339411 28672884 ~ 28679162 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding downstream 443064 29462161 ~ 29467527 (+)
G200785 NA non-coding downstream 465843 29484940 ~ 29485686 (+)
G200799 NA non-coding downstream 573923 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 617024 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 655689 29674786 ~ 29744233 (+)
G200341 LOC108426039 other upstream 822375 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1030678 27978282 ~ 27987895 (+)
G200235 NA other upstream 1199923 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1278464 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 1712987 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 508966 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 523651 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1990829 31009926 ~ 31084633 (+)
G201018 NA other downstream 1993614 31012711 ~ 31015045 (+)
G201207 NA other downstream 2923105 31942202 ~ 31987057 (+)

Expression


Co-expression Network