G200780 (ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677)


Basic Information

Item Value
gene id G200780
gene name ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29462161 ~ 29467527 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU272650
acaatagTAAGTGATCAGATATATTAGAAATTCAGTTCCATTAAATccagtttaataaaacaaaaactagtTCAGTGCAATAAAACGAAAGAGAACTGGCTTGTAATCAATCTGTAAAATGTCATTAGAGACAGAAACATAAGTAAGAAGTGTGAAACAGTACAGTGTAGCTTCATATGGCTATTGTTCATTCCTGCTGCGGCTTTAGCGTATGTAGGGAAGTAGTTTGGCATTGAACCACTCGCGAGAGAACTGTAAATGATCTCCATCAGTAGCAAGAAACACCAGCTTCCCCGCTTTATCCATTTCAGCCAATCCCAGTCGATCCTTTTATACAGAGCgctttcctgtaaagtttccGTCTTCTCAGCCTGACCAGTCACGAAGAACCCAAACCACTCTGAATCCACAGGGTCCACTACACTGTCCTGCAGGAACTTAACCATCACAAACTTCTCCAGCAACATGAGGTTCTTCTTGTACGTCTGATTCACCACCCGCTCCTGGTTTATATCAGCCAGGAAGAGGCTGTGCTGTTTGTACAGGTCATCATTGAGAGGATCGTGCCAGTACTGCGCCTGCACCAAATGTTTTTGGATGGCGTCTGTGTAAGCTCCAGAATTGAGCTTCTTCCGGATCCAGTCACAAATATGAGAGCTCTCCCCGGGGCAGCGAGGCAGACCATACACTCCTTGATGTTGTCCACCAACTGAGATCAGAGTCTTCATTGGAGGATTTGGACATCTCTGAGCCACAGCACGTAGAAACTGTGCCCCCTGAGAGAAGCCCATTGCATTGTAACCTGCTTTCAGCTTGGGGTCCTGGGCTAGTTTCTCACATACAAAGGACACTTGCTCATTAACATCCTTGAAGAACCCACTTTCAGTATCCTGAACAACAGTCTTGCCGATCATAAGAGATAACACATATATACCAGGCACTTCCTCTTCCACCATTTTCTTGATTGCACCCATGCTCAGAGGGTTGCAGCAGTTGTCCCCCATCCCATGCCAGATGACCAGGGGGGTGGTATCGTTGGACCCTCGAGCTGATCCTGAGATCAGGAGGAATGCACCAACTCCAATGAACAGGCGTGGGTCCATGTTCAgtccagctgctgctgcagatcCAACACAGCAGAGTTAATATTACAGACAACAGGAAGACAACAGAGACATCATGTGATTATTTATAAGGAAGCGGTGAGAGAAAGCGCCCTGTGGCTCAGGGAATA
>TU272652
acaatagTAAGTGATCAGATATATTAGAAATTCAGTTCCATTAAATccagtttaataaaacaaaaactagtTCAGTGCAATAAAACGAAAGAGAACTGGCTTGTAATCAATCTGTAAAATGTCATTAGAGACAGAAACATAAGTAAGAAGTGTGAAACAGTACAGTGTAGCTTCATATGGCTATTGTTCATTCCTGCTGCGGCTTTAGCGTATGTAGGGAAGTAGTTTGGCATTGAACCACTCGCGAGAGAACTGTAAATGATCTCCATCAGTAGCAAGAAACACCAGCTTCCCCGCTTTATCCATTTCAGCCAATCCCAGTCGATCCTCTTTATACAGAGCgctttcctgtaaagtttccGTCTTCTCAGCCTGACCAGTCACGAAGAACCCAAACCACTCTGAATCCACAGGGTCCACTACACTGTCCTGCAGGAACTTAACCATCACAAACTTCTCCAGCAACATGAGGTTCTTCTTGTACGTCTGATTCACCACCCGCTCCTGGTTTATATCAGCCAGGAAGAGGCTGTGCTGTTTGTACAGGTCATCATTGAGAGGATCGTGCCAGTACTGCGCCTGCACCAAATGTTTTTGGATGGCGTCTGTGTAAGCTCCAGAATTGAGCTTCTTCCGGATCCAGTCACAAATATGAGAGCTCTCCCCGGGGCAGCGAGGCAGACCATACACTCCTTGATGTTGTCCACCAACTGAGATCAGAGTCTTCATTGGAGGATTTGGACATCTCTGAGCCACAGCACGTAGAAACTGTGCCCCCTGAGAGAAGCCCATTGCATTGTAACCTGCTTTCAGCTTGGGGTCCTGGGCTAGTTTCTCACATACAAAGGACACTTGCTCATTAACATCCTTGAAGAACCCACTTTCAGTATCCTGAACAACAGTCTTGCCGATCATAAGAGATAACACATATATACCAGGCACTTCCTCTTCCACCATTTTCTTGATTGCACCCATGCTCAGAGGGTTGCAGCAGTTGTCCCCCATCCCATGCCAGATGACCAGGGGGGTGGTATCGTTGGACCCTCGAGCTGATCCTGAGATCAGGAGGAATGCACCAACTCCAATGAACAGGCGTGGGTCCATGTTCAgtccagctgctgTGTATTAAGGCGCTTCTGGTACCACGGGTCACATGACAGAACCGACAGAACAAATACGGAGTGAAACCAAAGCTGG

Function

symbol description
ppt1 Predicted to enable palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation and receptor-mediated endocytosis. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 1. Orthologous to human PPT1 (palmitoyl-protein thioesterase 1).

NR:

description
palmitoyl-protein thioesterase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272650 True 1234 lncRNA 0.46 9 29462161 29467157
TU272652 False 1197 lncRNA 0.47 10 29462161 29467527

Neighbor

gene id symbol gene type direction distance location
cap1 cap1,LOC107706206,LOC107697048 coding upstream 1530 29449616 ~ 29460631 (+)
kiaa0319l kiaa0319l,LOC106511748 coding upstream 14952 29423417 ~ 29447209 (+)
syce1 syce1 coding upstream 59878 29397398 ~ 29402283 (+)
LOC103039490 NA coding upstream 69708 29372764 ~ 29392453 (+)
LOC103038962 NA coding upstream 91879 29309371 ~ 29370282 (+)
LOC103042153 LOC108426616 coding downstream 1222 29468749 ~ 29478259 (+)
LOC103043706 NA coding downstream 11598 29479125 ~ 29483741 (+)
LOC103044018 eef1a1l1,LOC103044018,LOC108426629,LOC100526699 coding downstream 28573 29496100 ~ 29500103 (+)
LOC103044302 eef1a1l2,LOC103044302,LOC108426655,LOC108256978,LOC108426629,LOC103044018,LOC107589444 coding downstream 32834 29500361 ~ 29507353 (+)
LOC103045125 NA coding downstream 44176 29511703 ~ 29517460 (+)
G200628 NA non-coding upstream 443064 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 680127 28770134 ~ 28782034 (+)
G200482 LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586 non-coding upstream 716837 28703778 ~ 28745324 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 723835 28736851 ~ 28738326 (+)
G200488 NA non-coding upstream 733205 28726065 ~ 28728956 (+)
G200785 NA non-coding downstream 17413 29484940 ~ 29485686 (+)
G200799 NA non-coding downstream 125493 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 168594 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 207259 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 405983 29873510 ~ 29878401 (+)
G200341 LOC108426039 other upstream 1265963 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1474266 27978282 ~ 27987895 (+)
G200235 NA other upstream 1643511 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1722052 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 2156575 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 60536 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 75221 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1542399 31009926 ~ 31084633 (+)
G201018 NA other downstream 1545184 31012711 ~ 31015045 (+)
G201207 NA other downstream 2474675 31942202 ~ 31987057 (+)

Expression


Co-expression Network