G200799


Basic Information

Item Value
gene id G200799
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29593020 ~ 29593537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU272702
ACACAAAAACTCTACATCATTTGTTCTTATAAACTGAACAAATATCATCAAAAAGTAACATAATGCAGGAAAATGATACGTCTTGCACCTAACATCTGGGGTTACACATAGGGCCCCTCCACTGTACTCTACTCTCCCACTTACTCACTGTTTCCTAAACAACACTAGTAACCTTCCACACCTAACAGCTAAGTTACTGTGGAGTTGATGATCCATGAACATGAAATACCCAACCCTCCTATCACAAATACACCTAAACATCTACTACGCAATGATTAATTAGGCCCACAatacctccagaaggctcattCTGGCATTCTAGACTCACTCCCCTTCAAGCTCACAACATGGgacattttaagattttaccTTGACTCTACTGTTTAAACATCAGATGCATCAAACAGCCTATGTCTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272702 True 419 lncRNA 0.40 2 29593020 29593537

Neighbor

gene id symbol gene type direction distance location
pithd1 pithd1,LOC107654704 coding upstream 35487 29554236 ~ 29557533 (+)
rpl11 rpl11 coding upstream 69150 29519533 ~ 29523870 (+)
LOC103045125 NA coding upstream 75560 29511703 ~ 29517460 (+)
LOC103044302 eef1a1l2,LOC103044302,LOC108426655,LOC108256978,LOC108426629,LOC103044018,LOC107589444 coding upstream 85667 29500361 ~ 29507353 (+)
LOC103044018 eef1a1l1,LOC103044018,LOC108426629,LOC100526699 coding upstream 92917 29496100 ~ 29500103 (+)
gatad1 gatad1,LOC102800149 coding downstream 8330 29601867 ~ 29604753 (+)
LOC103021940 LOC108426757 coding downstream 13532 29607069 ~ 29625468 (+)
LOC103021391 lrrc14b,LOC103021391 coding downstream 32750 29626287 ~ 29636049 (+)
LOC103022546 NA coding downstream 53231 29646768 ~ 29652821 (+)
LOC111195487 NA coding downstream 655050 30248587 ~ 30249855 (+)
G200785 NA non-coding upstream 107334 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 125493 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 573923 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 810986 28770134 ~ 28782034 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 854694 28736851 ~ 28738326 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 42584 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 81249 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 279973 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 755828 30349365 ~ 30393273 (+)
G200869 NA non-coding downstream 806709 30400246 ~ 30400752 (+)
lypla2 lypla2,lypa2 other upstream 24945 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 40136 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 1396822 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1605125 27978282 ~ 27987895 (+)
G200235 NA other upstream 1774370 27815336 ~ 27818650 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1416389 31009926 ~ 31084633 (+)
G201018 NA other downstream 1419174 31012711 ~ 31015045 (+)
G201207 NA other downstream 2348665 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 2460178 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 2675761 32269298 ~ 32287803 (+)

Expression


Co-expression Network