G200803 (LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157)


Basic Information

Item Value
gene id G200803
gene name LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29636121 ~ 29640007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU272707
GCTGATTTCTGGAAATTACTGTGATATTGTAAGATATTGTGACATTTTTATGTGAAAAATTATAGCCTGGTATTATATTTCTCGGATCATAAATACAATTTCTGGGCACGTTTTAATTCTGACTTAATTCTtgacttcttcttctttgtctaaTTGTGCATGCGCCAATACAATAATGCCAGGGTGTCAAATCTCATCCACTGGTCCAAGGGTCATTGTGGGTGCAGATTTTTATCCCTACACACCTCAAATGTTTAGGACGTTAAGAGTCCAACTCAATAAAGAACTGGATTAAAACACATGGATTTAAATGCTTGGATGCATTTCCCCCTAGTGGAAACAGCAAATCAACAAAAGCATGTCATAGTCATTGGGCCTCTTTCAAAGCCTGTTAACAGCAGACGATAAGTAGATGTTGTGGaaggttaaaaaaatgttcctgCCCTCTTAAACTCCTGTTCCTGTGCAGTGCATACACTATACCTCCTCATATTTTGTCCACTGGGTCTTAGGAAGAATCTGTTGCTTCATAGTGAGGTCAAGGGCCCTCTTAATACGGAAAATGCGGTCGTTGTAGACTGGCTCTGGAAGGCGGCGGATAGCCTCTTTCACATCGCCGTTCTCATAGATTGTGTCGTCATGCATCAGACCAAGCTTGTTGAACCCGCAGGCATTGTAGTACCACTTCCTGAAGCCCAGCAAAAGCCTGCCGCTAGCAACTGGTGCCTTGGACGCCATGTTCGATGTCAGAGAGCGCAGTGGAGGACTGTGGGAACTGTGACGCTCCGCCTGTGACGCTCCGCCA
>TU272708
TGCCAGAAAGGAATTTTAATAGGTACAGGAACTTCACAAACTGATAAACATCATCTTAAATACAAGACAGCGAACACCACAGCAAAGAGCAGGATTTCACCTCTTCCTCTGCATTCTACTTCTTCTGCCACTCTTCCTTTTCTTGTCTTTCACTGACAACTTCTTTCAAGTAGGGTTCAAGATAACGCACATCCTCCTCATATTTTGTCCACTGGGTCTTAGGAAGAATCTGTTGCTTCATAGTGAGGTCAAGGGCCCTCTTAATACGGAAAATGCGGTCGTTGTAGACTGGCTCTGGAAGGCGGCGGATAGCCTCTTTCACATCGCCGTTCTCATAGATTGTGTCGTCATGCATCAGACCAAGCTTGTTGAACCCGCAGGCATTGTAGTACCACTTCCTGAAGCCCAGCAAAAGCCTGCCGCTAGCAACTGGTGCCTTGGACGCCATGTTCGATGTCAGAGAGCGCAGTGGAGGACTGTGGGAACTGTGACGCTCCGCCTGTGACGCTCCGCCA

Function

NR:

description
PREDICTED: cytochrome b-c1 complex subunit 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272707 True 805 lncRNA 0.44 3 29637014 29640007
TU272708 False 515 lncRNA 0.49 4 29636121 29640007

Neighbor

gene id symbol gene type direction distance location
LOC103021391 lrrc14b,LOC103021391 coding upstream 72 29626287 ~ 29636049 (+)
LOC103021940 LOC108426757 coding upstream 10653 29607069 ~ 29625468 (+)
gatad1 gatad1,LOC102800149 coding upstream 31368 29601867 ~ 29604753 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding upstream 35957 29570078 ~ 29600164 (+)
pithd1 pithd1,LOC107654704 coding upstream 78588 29554236 ~ 29557533 (+)
LOC103022546 NA coding downstream 6761 29646768 ~ 29652821 (+)
LOC111195487 NA coding downstream 608580 30248587 ~ 30249855 (+)
utp23 utp23 coding downstream 1331396 30971403 ~ 30974511 (+)
aard LOC108424810 coding downstream 1338743 30978750 ~ 30985844 (+)
stmnd1 NA coding downstream 1416013 31056020 ~ 31062482 (+)
G200799 NA non-coding upstream 42584 29593020 ~ 29593537 (+)
G200785 NA non-coding upstream 150435 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 168594 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 617024 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 854087 28770134 ~ 28782034 (+)
LOC111195537 NA non-coding downstream 34779 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 233503 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 709358 30349365 ~ 30393273 (+)
G200869 NA non-coding downstream 760239 30400246 ~ 30400752 (+)
G200971 trps1 non-coding downstream 844651 30484658 ~ 30488504 (+)
lypla2 lypla2,lypa2 other upstream 68046 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 83237 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 1439923 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1648226 27978282 ~ 27987895 (+)
G200235 NA other upstream 1817471 27815336 ~ 27818650 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1369919 31009926 ~ 31084633 (+)
G201018 NA other downstream 1372704 31012711 ~ 31015045 (+)
G201207 NA other downstream 2302195 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 2413708 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 2629291 32269298 ~ 32287803 (+)

Expression


Co-expression Network