G200840


Basic Information

Item Value
gene id G200840
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29873510 ~ 29878401 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU272754
GTTACCAGTGACCCAGGTGTTGCACCTCCTCGCCTCAGGAGGTCACTCTCGCCACAGTTTTAGTCCTTCTTCGGGAGCATTAGTATTGTATAAATAGACACCACACCTGCACTCAGGTGCGACGTCTTGTCTGGTCTTACCTTGCATTTCGAAGCACTTCTGTATGTTTATGTTACTCTGGTTTTTTGACTCCTGCTCTCGTTTTCTGGACTGTGATTTTTGGATATTCCCTGATTGTTACTTCTGCCTGGATTATTCTTTCTGTGTGAATAAACCTGCTTTTGGATCCTCATCCTTGGTCTCGCGTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272754 True 311 lncRNA 0.46 2 29873510 29878401

Neighbor

gene id symbol gene type direction distance location
LOC103022546 NA coding upstream 220689 29646768 ~ 29652821 (+)
LOC103021391 lrrc14b,LOC103021391 coding upstream 237461 29626287 ~ 29636049 (+)
LOC103021940 LOC108426757 coding upstream 248042 29607069 ~ 29625468 (+)
gatad1 gatad1,LOC102800149 coding upstream 268757 29601867 ~ 29604753 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding upstream 273346 29570078 ~ 29600164 (+)
LOC111195487 NA coding downstream 370186 30248587 ~ 30249855 (+)
utp23 utp23 coding downstream 1093002 30971403 ~ 30974511 (+)
aard LOC108424810 coding downstream 1100349 30978750 ~ 30985844 (+)
stmnd1 NA coding downstream 1177619 31056020 ~ 31062482 (+)
cap2 cap2,LOC107706226 coding downstream 1219498 31097899 ~ 31133970 (+)
LOC111195537 NA non-coding upstream 129277 29674786 ~ 29744233 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding upstream 233503 29636121 ~ 29640007 (+)
G200799 NA non-coding upstream 279973 29593020 ~ 29593537 (+)
G200785 NA non-coding upstream 387824 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 405983 29462161 ~ 29467527 (+)
G200864 NA non-coding downstream 470964 30349365 ~ 30393273 (+)
G200869 NA non-coding downstream 521845 30400246 ~ 30400752 (+)
G200971 trps1 non-coding downstream 606257 30484658 ~ 30488504 (+)
G201004 NA non-coding downstream 862277 30740678 ~ 30740930 (+)
G201006 NA non-coding downstream 864358 30742759 ~ 30743450 (+)
lypla2 lypla2,lypa2 other upstream 305435 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 320626 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 1677312 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1885615 27978282 ~ 27987895 (+)
G200235 NA other upstream 2054860 27815336 ~ 27818650 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1131525 31009926 ~ 31084633 (+)
G201018 NA other downstream 1134310 31012711 ~ 31015045 (+)
G201207 NA other downstream 2063801 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 2175314 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 2390897 32269298 ~ 32287803 (+)

Expression


Co-expression Network