Gene
RNA
| Item | Value |
|---|---|
| gene id | G201019 |
| gene name | nup153,LOC107706220 |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035919.1 |
| NCBI id | CM008322.1 |
| chromosome length | 38085671 |
| location | 31018604 ~ 31029889 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| nup153 | Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Acts upstream of or within angiogenesis. Predicted to be part of nuclear pore. Orthologous to human NUP153 (nucleoporin 153). |
| description |
|---|
| PREDICTED: nuclear pore complex protein Nup153 isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU273008 | True | 985 | lncRNA | 0.55 | 5 | 31018604 | 31029889 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| aard | LOC108424810 | coding | upstream | 32760 | 30978750 ~ 30985844 (+) |
| utp23 | utp23 | coding | upstream | 44093 | 30971403 ~ 30974511 (+) |
| LOC111195487 | NA | coding | upstream | 768749 | 30248587 ~ 30249855 (+) |
| LOC103022546 | NA | coding | upstream | 1365783 | 29646768 ~ 29652821 (+) |
| LOC103021391 | lrrc14b,LOC103021391 | coding | upstream | 1382555 | 29626287 ~ 29636049 (+) |
| stmnd1 | NA | coding | downstream | 26131 | 31056020 ~ 31062482 (+) |
| cap2 | cap2,LOC107706226 | coding | downstream | 68010 | 31097899 ~ 31133970 (+) |
| vps28 | vps28,LOC107592928,LOC107696523 | coding | downstream | 111949 | 31141838 ~ 31149221 (+) |
| mapk15 | mapk15,LOC107696521 | coding | downstream | 120971 | 31150860 ~ 31162358 (+) |
| grina | grina,LOC107654720,LOC107706230,LOC101487737,LOC102211845 | coding | downstream | 134337 | 31164226 ~ 31187101 (+) |
| G201030 | NA | non-coding | upstream | 12679 | 31005632 ~ 31005925 (+) |
| G201010 | NA | non-coding | upstream | 208378 | 30809995 ~ 30810226 (+) |
| G201008 | NA | non-coding | upstream | 270402 | 30748003 ~ 30748202 (+) |
| G201006 | NA | non-coding | upstream | 275154 | 30742759 ~ 30743450 (+) |
| G201004 | NA | non-coding | upstream | 277674 | 30740678 ~ 30740930 (+) |
| G201135 | NA | non-coding | downstream | 230056 | 31259945 ~ 31262960 (+) |
| G201163 | NA | non-coding | downstream | 411556 | 31441445 ~ 31451756 (+) |
| G201167 | NA | non-coding | downstream | 518460 | 31548349 ~ 31631753 (+) |
| G201206 | NA | non-coding | downstream | 909612 | 31939501 ~ 31939940 (+) |
| G201225 | NA | non-coding | downstream | 983189 | 32013078 ~ 32065707 (+) |
| G201018 | NA | other | upstream | 3559 | 31012711 ~ 31015045 (+) |
| lypla2 | lypla2,lypa2 | other | upstream | 1450529 | 29528063 ~ 29568075 (+) |
| eloa | tceb3 | other | upstream | 1465720 | 29542748 ~ 29552884 (+) |
| G200341 | LOC108426039 | other | upstream | 2822406 | 28193574 ~ 28196198 (+) |
| LOC103032101 | NA | other | upstream | 3030709 | 27978282 ~ 27987895 (+) |
| G201207 | NA | other | downstream | 912313 | 31942202 ~ 31987057 (+) |
| tpmt | tpmt | other | downstream | 1023826 | 32053715 ~ 32067640 (+) |
| LOC103043810 | ago4,LOC106511154,LOC103043810 | other | downstream | 1239409 | 32269298 ~ 32287803 (+) |
| G201445 | flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 | other | downstream | 1893639 | 32923528 ~ 32927919 (+) |
| bud31 | bud31,LOC107737741,LOC107720055 | other | downstream | 1944431 | 32974320 ~ 32977910 (+) |
