rbm24 (rbm24,rbm24a,LOC107754275,LOC107592929)


Basic Information

Item Value
gene id rbm24
gene name rbm24,rbm24a,LOC107754275,LOC107592929
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 31009926 ~ 31084633 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU273011
TGGCAATTACCCATGGTTTTTATTTATCACTCGTCCAGTAATAATTATCATGGCTTTAAAATTAAAGTAGACGTCCTTATTATCCAAAGTCACCCTAGTCCATTTAAACAagcaatagaaaaatatatacttaatactTTTTACAACACTGCTTTTGGTCCAAACAAAAGTGGATCAGAAATGCCAATATACCTTTATGTCAAAGGATCCCCAATTTGCATTTAAGGTTCATTTTAAATGGATTTGGGCAACTTTGAATTAAGGGCTTTACATAATAAATTCTAAAAGACAAAAATTCTGAACGAAAAGAAAGTTGGTTTAACACACAAAAACTTCacagattaaaaaaagttactatttacaattttaataatattcaaagGCCAATtgagagagagtgcgagagagaacgagagaatgagacagaacATAAGACTGGGAAAAGTCAGAACaaaggagaaggagagagcAGGTACTGAGAGAAAGAGTACTAAAAGGGCATAGAAGATGAAGGAAATGCAGATTTACAAAGGACCTCTGCAGCAGAGCTCCAGGGTTACTTTCTGTTTCACCCATCAGTCTCCACAGCGCACGGGTGTGGCCCACACCACCCTGCCCTTTCCTTAAACACATTCATTTGCCTCTCATGTCAAGACATCAACCAGCACAGTTCAGCATGTACAAAGaaaccacatacacacatcaaTCTgcgcacaaaaaaaagaaaaaaaaggaaaagaaaaaatatccgAACACTTCAGGTTCATAGAAACACTCGCCTCAGAACATACAGCAACGAGTCCTCTTTTTTACCTGATCACTCCAAGCAAAACCTACTTTATCAATTCCCTAaagttttgcatgtttttttttctttacaaaaagtCATGCGCAAATCCTGCCAAGAATGCAGATgttgaaaatatatatgtacacatacacacacaaacacacaagcgGATGGCTCTGGAAAGAACGCATCACTTGTGCTCGTTTGTTGAGCTGTCACTTTTTAATCCCTGGGCCCGTTTGGGAACAGGTCCTCTACAGCTCTGTCAGCAATTCCACCTCTGTCCTAGAGAGGGGCTGGAGGCTTAAGCACAGGCCACCCACCCTCTAACACATGCACACCCTCTCTAACACCCATCCCGGCCTCCCGGTGTGTCCAACACCTCTCCCCAAAGCGCaacaagggagagagagaaagataatggagacacacacacacacacacacacacacttacttataatcacacacatacacattatcCCTGTACCTATGGACTATTATCAGTCAACCAATCCATATCATTGAAAATGAtctctgttctttttttgtgttcttgTTGAAAAACCAAGCAAACACCTATATGTCTGCACACCAGCATGTCTTTCCTAGTGAGAGACAAATCCATTCTCCAttctctccttaaaaaaaagagcTAACCTTAACATCTGTGTGTTAGTAAGCAGCACTAAAGCCGAGAGTTCGAACTCCAGTACGCGGGTTCTTTGTGTGCCTTACAGTTGTAATGCTATttaaagaggaaaaagagatctactatttaagatatttattttgagAGTTTGTATGTTGGGCTCTGAGGACAGACTACTTGGAGGCGGTACtgtattaatataatgtattcATTCATCTCAtggcatattattattattataagttatttaatagatttagttgtaatattattaacatactcaaccaaaaaaaaaaaagaaatgttgatGTAGGACTTATTTAAGATACAATTCTGTATGTGCACTGtacaattctatttttttctatatgcCTTTTGAATTTTAGAACATTGCATTATCGGCTGCAGTATCGGCTGGGTTTAATGCCTATTGTaagatgtttatttaaaatgcagGCCTGTTTGCAGGCAGGTTCTTTTCTTTCGTCATATCTAGGACTGTCAAAGATTtcggaaaaaaatacaaaagctacacaaaaaaaaaaaaacgaacaaaaaaatCTCCTGGCAGAAACTAAGCAACATGCTGCTTCATACACTAGAATGTATAGTCCTTGTCAAGGTTGAATAGCTGTGCTTCTACTGCTTTTAATATTCATCAGATGGGCTATTTTACACTGTTGGGAATTTTTATACTTGAACTATTTCTTACAagggaaaatatgaaaatgaatcacaaaaaaaaactttttaaggaAGATTTTCATTGTCACTGGATTTGGGCATGTAAGGtgttatatttactatttaacGTAAATCCAAAGGTCCTCTCGGTAAaccttatttaaatattatttcagATTTTCAACACTATTTACtctaaatgga
>TU273012
TGGCAATTACCCATGGTTTTTATTTATCACTCGTCCAGTAATAATTATCATGGCTTTAAAATTAAAGTAGACGTCCTTATTATCCAAAGTCACCCTAGTCCATTTAAACAagcaatagaaaaatatatacttaatactTTTTACAACACTGCTTTTGGTCCAAACAAAAGTGGATCAGAAATGCCAATATACCTTTATGTCAAAGGATCCCCAATTTGCATTTAAGGTTCATTTTAAATGGATTTGGGCAACTTTGAATTAAGGGCTTTACATAATAAATTCTAAAAGACAAAAATTCTGAACGAAAAGAAAGTTGGTTTAACACACAAAAACTTCacagattaaaaaaagttactatttacaattttaataatattcaaagGCCAATtgagagagagtgcgagagagaacgagagaatgagacagaacATAAGACTGGGAAAAGTCAGAACaaaggagaaggagagagcAGGTACTGAGAGAAAGAGTACTAAAAGGGCATAGAAGATGAAGGAAATGCAGATTTACAAAGGACCTCTGCAGCAGAGCTCCAGGGTTACTTTCTGTTTCACCCATCAGTCTCCACAGCGCACGGGTGTGGCCCACACCACCCTGCCCTTTCCTTAAACACATTCATTTGCCTCTCATGTCAAGACATCAACCAGCACAGTTCAGCATGTACAAAGaaaccacatacacacatcaaTCTgcgcacaaaaaaaagaaaaaaaaggaaaagaaaaaatatccgAACACTTCAGGTTCATAGAAACACTCGCCTCAGAACATACAGCAACGAGTCCTCTTTTTTACCTGATCACTCCAAGCAAAACCTACTTTATCAATTCCCTAaagttttgcatgtttttttttctttacaaaaagtCATGCGCAAATCCTGCCAAGAATGCAGATgttgaaaatatatatgtacacatacacacacaaacacacctttCCTTTTCAAGGTCAGGTTTTTGCTTGATTgtattattttgcatttttgagtcttggttagATTTTGTCAGTGGACCAGGGGTCCACAGCCTACTACTGACCATCAACTGCAAATGAAACCACCTGCAAACAGAGCCATCAGAGTGCCATGCTCACAATACTAAGTACTTCAGTGTTTGTTCAGAGATGACAGCGGATGTAATTTCCAGCTTTATTTCCTACGTCGGACGGCGGTTTTTATCTTGCGGCCGGAGATGGTGTGCTGTGTAGCAGGTGTTGCACTTGAAACACTCTTTGTTGACCCGATATTAAAGGCTGGGGGCTGCGAAAAGCCGAAACCTCCACCAGCTGCCACAGGCTGTGCAGACATGACTGGCGAAGGTGCAGAATTGGCTGCATTTCCTGCTCCTCCTCCAAAAGTAAAAACAGCACTGTTTCTGTTTGGTGTGCCAAAAGCACTGGCTCCTCCAAACTGGAAACCTCCTTGGCCAGCAGAGGGAGCTGAGGACCCAAAAACTGGAGTTGCATTAGGCTGTTGACCAAAGCTAGGAGCAGCATTGGGTTTGGCTCCAAAGGCGGGAGATGCTGAGTTTGTAGCTGAGAACGAGGGAGCAGGTGATCCGAATGCGGGAGCGGCAGGCTGTGATGAACCTTGCCCAAAAGCAGGTGCCTGACCAGAACCAAAGCCAGTTGACACAGTGGCAGACGAAAACACAAATGGAGAGGGGGCTGCTGAGGGCGCAGGGGCTAAAGGGAAAGAGGCAGAAATTAG
>XM_015604909.2
GCACTAAGCAGAAGTAACGTCAGTTATCTACGCAGGGGCGTTCAGACCCACCTGAGGATCTCCGGCACAATCCGCTCCACATTTCCTCCTGACTGACACTAAATCTACCTCGTTTGTAGCCTGAAGCCGTGTTTTATACTCCTCagaagctgttttttttgtttcggAACTCGTGTCGTGCGtttaccagtttttttttaagaatttataagtatatataagtatataagtaaGTTAACTAGCAGGAAAGTTGCCTCGACTTTGAATTATAATACATTGCACTAAGTTACGTTGTTTTTTCTCCTTAACTATTCGTTTTGCACTTGAGTATAGCTCTATTTttgtacagaaaataaaaaacaacaaaataaggATGCATACCACCCAAAAGGACACGACATACACCAAGATATTCGTCGGTGGGCTCCCCTATCACACCACGGACTCCAGCCTGAGGAAATATTTTGAAGTGTTTGGGGAAATCGAGGAGGCTGTGGTGATTACAGACAGGCAGACTGGGAAGTCCAGGGGGTATGGATTTGTGACTATGGCAGATCGCTCTGCAGCAGACAGAGCTTGTAAGGACCCAAACCCCATTATCGATGGCAGGAAAGCCAATGTAAACCTGGCTTACCTGGGAGCCAAGCCACGAGTGATGCAGCCAGGTTTCACGTTTGGCGTTCCCCAGATTCATCCAGCTTTCATTCAAAGACCTTATGGGATTCCAGCTCACTACGTGTACCCGCAGGCCTTCGTGCAGCCCAGTGTGGTCATCCCTCACGTGCAGCCGACCACTGCCTCCGCCACGGCCTCATCACCCTACATCGACTACACTGGAGCTGCATATGCACAGTATGCAAGCGCAGCAGCCGCTGCAGCTGCGTATGAGCAGTACCCCTATGCAGCATCTCCAGCAGCAACCGGATACGTGGCCACCGCCGGCTATGGCTATGCCATGCAGCAGCCTCTGGCCGCTGCTGCCGCCCCAGGCACTGCGGCCGCTGCTGCCGCAGCTTTCGGCCAGTACCAGCCCCAGCAGCTGCAAGCCGACCGGATGCAATAGCAACTACTGGcatggagaggaggaggaggaggagacacCAGGGGAGCGAGCCAGCGCCCAGCGACTGCTCATCAGCTGTGAAGGGGATGTGGATGAAGATGATtatttatgatgatgatgatggtggtaaTGATGAAGGGCGTATCTATCGctggaggagagaaaaaaggagataataagagagagaggagaattgATGATTGCTGGAGATGATGATTATTAGTGAGGTGGGAACTCCATTGCTTTCCAACTTGCTGTgattaaccaaaaaaaattataataattataacaatgaaaaaatgagaaaaacagaaaaaaagaaaatgtgggagaaaaaaaaatcacagaaaagtGTAAAGGAGGGCGATTTAACTTTTTACCATTATCATCAGTAATGTTACTGTTATCTTTATGATTACTAGTGAAgtagtttattataaatatatatatatttattgctaAAGGAGAACGCAATGACTAATCACTGTGGTTTGAAGATGTAGAAGAAGCCTTAAGTCCCAATGCTGTCATTAACGTAGGAGACCGTTCTTCATTGTTGTCGAAGGACGTTAGGTGTCCCCCACAGTGTTTTGGATCTGAAGCCCTGTaacttatacatatatatttattatcatttatttgagGGCTCTTTTTGTTCTGTCTTCTCACGTGCATTGCGAGTCGTtaacgttgttgttttttttctgatgatcAGGGAAATGGAGCATTTTCCAGCGAATTAGTAAAGACAAACTCTGCCAATCAGGGAATAGTAGATGTAACTGTGGAGGAATGGAGTAAAGGAAAGCGTAGTCGTAGCTTTGTTTCACGTGTTCAGAACTacctttgttgttgttttttaatcttcCTGATGCTGAATGTTCCCCTTCTCTGACTCCTGACTCCTGTTTTGACCTCTTGACCTATGCAAAGCAAACAAGCCACCAGGAGACAAAACAAACTGCAAGAAAAGCAGAGATTTTCTGTCGACCCCTCTCTCTGAAGGACAACGAACAATTTGAGGGCGCTCTGAAAGGACACAATGATGTTGTATTATTTGCCTGCATggacaatacacacacacacacacacacacacacatacactcacaggTACATACATTTAAGTATATCTATACACACAATACTATACTTATTTCCTTAACACTGTTTAAGTGAGGGGAGGGGTATAAACTCGTGTATATATGCACACAGAAACAACTATACATACATACTTGTAGAGAATAAGAAACAGCTACAAACTCAGCTGGAGGCTGGGAGTTGGAGGCAGGGAGCAGCAGCTGCTGTTGTGTGGGGAGTTAcatacaagcacacacacatacacaagcgGATGGCTCTGGAAAGAACGCATCACTTGTGCTCGTTTGTTGAGCTGTCACTTTTTAATCCCTGGGCCCGTTTGGGAACAGGTCCTCTACAGCTCTGTCAGCAATTCCACCTCTGTCCTAGAGAGGGGCTGGAGGCTTAAGCACAGGCCACCCACCCTCTAACACATGCACACCCTCTCTAACACCCATCCCGGCCTCCCGGTGTGTCCAACACCTCTCCCTTCTGCACAGCTCCTCTCTGGAATGGGACACCAAAGCGCaacaagggagagagagaaagataatggagacacacacacacacacacacacacacttacttataatcacacacatacacattatcCCTGTACCTATGGACTATTATCAGTCAACCAATCCATATCATTGAAAATGAtctctgttctttttttgtgttcttgTTGAAAAACCAAGCAAACACCTATATGTCTGCACACCAGCATGTCTTTCCTAGTGAGAGACAAATCCATTCTCCAttctctccttaaaaaaaagagcTAACCTTAACATCTGTGTGTTAGTAAGCAGCACTAAAGCCGAGAGTTCGAACTCCAGTACGCGGGTTCTTTGTGTGCCTTACAGTTGTAATGCTATttaaagaggaaaaagagatctactatttaagatatttattttgagAGTTTGTATGTTGGGCTCTGAGGACAGACTACTTGGAGGCGGTACtgtattaatataatgtattcATTCATCTCAtggcatattattattattataagttatttaatagatttagttgtaatattattaacatactcaaccaaaaaaaaaaaagaaatgttgatGTAGGACTTATTTAAGATACAATTCTGTATGTGCACTGtacaattctatttttttctatatgcCTTTTGAATTTTAGAACATTGCATTATCGGCTGCAGTATCGGCTGGGTTTAATGCCTATTGTaagatgtttatttaaaatgcagGCCTGTTTGCAGGCAGGTTCTTTTCTTTCGTCATATCTAGGACTGTCAAAGATTtcggaaaaaaatacaaaagctacacaaaaaaaaaaaaacgaacaaaaaaatCTCCTGGCAGAAACTAAGCAACATGCTGCTTCATACACTAGAATGTATAGTCCTTGTCAAGGTTGAATAGCTGTGCTTCTACTGCTTTTAATATTCATCAGATGGGCTATTTTACACTGTTGGGAATTTTTATACTTGAACTATTTCTTACAagggaaaatatgaaaatgaatcacaaaaaaaaactttttaaggaAGATTTTCATTGTCACTGGATTTGGGCATGTAAGGtgttatatttactatttaacGTAAATCCAAAGGTCCTCTCGGTAAaccttatttaaatattatttcagATTTTCAACACTATTTACtctaaatggaaataaaaaggtTCTATATTTCAACCTTAA

Function

symbol description
rbm24a Predicted to enable RNA binding activity. Involved in positive regulation of sarcomere organization. Acts upstream of or within several processes, including atrial cardiac muscle tissue development; embryonic organ morphogenesis; and regulation of sarcomere organization. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including cardiovascular system; cephalic musculature; immature eye; segmental plate; and sensory system. Used to study cataract and microphthalmia. Orthologous to human RBM24 (RNA binding motif protein 24).
rbm24 Enables mRNA 3'-UTR AU-rich region binding activity; mRNA CDS binding activity; and sequence-specific mRNA binding activity. Involved in several processes, including negative regulation of cytoplasmic translation; positive regulation of cell differentiation; and regulation of mRNA metabolic process. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: RNA-binding protein 24

GO:

id name namespace
GO:0003228 atrial cardiac muscle tissue development biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0010830 regulation of myotube differentiation biological_process
GO:0060297 regulation of sarcomere organization biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

RNA

RNA id representative length rna type GC content exon number start site end site
TU273011 False 2329 lncRNA 0.37 3 31009926 31084604
TU273012 False 1729 TUCP 0.43 3 31009926 31012165
XM_015604909.2 True 3842 mRNA 0.42 4 31069506 31084633

Neighbor

gene id symbol gene type direction distance location
aard LOC108424810 coding upstream 24082 30978750 ~ 30985844 (+)
utp23 utp23 coding upstream 35415 30971403 ~ 30974511 (+)
LOC111195487 NA coding upstream 760071 30248587 ~ 30249855 (+)
LOC103022546 NA coding upstream 1357105 29646768 ~ 29652821 (+)
LOC103021391 lrrc14b,LOC103021391 coding upstream 1373877 29626287 ~ 29636049 (+)
cap2 cap2,LOC107706226 coding downstream 13266 31097899 ~ 31133970 (+)
vps28 vps28,LOC107592928,LOC107696523 coding downstream 57205 31141838 ~ 31149221 (+)
mapk15 mapk15,LOC107696521 coding downstream 66227 31150860 ~ 31162358 (+)
grina grina,LOC107654720,LOC107706230,LOC101487737,LOC102211845 coding downstream 79593 31164226 ~ 31187101 (+)
LOC103030437 slc30a8,rprd1a,LOC107754284,LOC106570487 coding downstream 107123 31191756 ~ 31218918 (+)
G201030 NA non-coding upstream 4001 31005632 ~ 31005925 (+)
G201010 NA non-coding upstream 199700 30809995 ~ 30810226 (+)
G201008 NA non-coding upstream 261724 30748003 ~ 30748202 (+)
G201006 NA non-coding upstream 266476 30742759 ~ 30743450 (+)
G201004 NA non-coding upstream 268996 30740678 ~ 30740930 (+)
G201135 NA non-coding downstream 175312 31259945 ~ 31262960 (+)
G201163 NA non-coding downstream 356812 31441445 ~ 31451756 (+)
G201167 NA non-coding downstream 463716 31548349 ~ 31631753 (+)
G201206 NA non-coding downstream 854868 31939501 ~ 31939940 (+)
G201225 NA non-coding downstream 928445 32013078 ~ 32065707 (+)
lypla2 lypla2,lypa2 other upstream 1441851 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 1457042 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 2813728 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 3022031 27978282 ~ 27987895 (+)
G200235 NA other upstream 3191276 27815336 ~ 27818650 (+)
G201207 NA other downstream 857569 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 969082 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 1184665 32269298 ~ 32287803 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other downstream 1838895 32923528 ~ 32927919 (+)
bud31 bud31,LOC107737741,LOC107720055 other downstream 1889687 32974320 ~ 32977910 (+)

Expression


Co-expression Network