G201206


Basic Information

Item Value
gene id G201206
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 31939501 ~ 31939940 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU273237
CTTACACTCCTATAATTTAgaccagcgtttctcaaccttttttctatcacgtcaccctttaaatatatgggggggttggtgctggcgcagtacttcaggtgagaacgaggggtgttgctggcggaatatgaaataaaatagcgcgtcaCAATTAGCGCGATtagtgctgcctgtgaattgggacacaccccgacacgagctgactctggaaaggaaatatgcacgtgaggcgcaatattttgacggcacccccgatgaagccagacggcaccccagggtacACTGATTTAGACCATCTAACATATTTCCTATACTTCTGCTGGTagtgttttcttttaaaatgctttaaactaACAAGGTATCACAAATCAAATGAACATCAGTACACATTTAAAGTTGTCTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU273237 True 405 lncRNA 0.44 2 31939501 31939940

Neighbor

gene id symbol gene type direction distance location
trnaq-cug_20 NA coding upstream 507526 31431904 ~ 31431975 (+)
trnaq-cug_19 NA coding upstream 507859 31431571 ~ 31431642 (+)
trnaq-cug_18 NA coding upstream 508189 31431241 ~ 31431312 (+)
trnar-acg_20 NA coding upstream 508478 31430951 ~ 31431023 (+)
trnaq-uug_6 NA coding upstream 508883 31430547 ~ 31430618 (+)
LOC103047171 ext1,ext1c,LOC107592945,LOC107706241,LOC107654729,LOC107688378,LOC107754264 coding downstream 131705 32071645 ~ 32180536 (+)
ncdn NA coding downstream 247217 32187157 ~ 32193783 (+)
tfap2e tfap2e coding downstream 256275 32196215 ~ 32211930 (+)
LOC103044735 LOC108430542,LOC107591984,LOC108257069,LOC107654683,LOC107592950,LOC107754258 coding downstream 352239 32292179 ~ 32295555 (+)
cdca8 cdca8 coding downstream 360434 32300374 ~ 32304369 (+)
G201167 NA non-coding upstream 307748 31548349 ~ 31631753 (+)
G201163 NA non-coding upstream 487745 31441445 ~ 31451756 (+)
G201135 NA non-coding upstream 676541 31259945 ~ 31262960 (+)
G201019 nup153,LOC107706220 non-coding upstream 909612 31018604 ~ 31029889 (+)
G201030 NA non-coding upstream 933576 31005632 ~ 31005925 (+)
G201225 NA non-coding downstream 73138 32013078 ~ 32065707 (+)
G201281 LOC108430540,LOC102218321,LOC103154989,LOC108257141,LOC103371078,LOC103461361 non-coding downstream 241755 32181695 ~ 32186335 (+)
G201289 psmb2,LOC107591978,LOC107592948,LOC107688376 non-coding downstream 277194 32217134 ~ 32228952 (+)
G201287 NA non-coding downstream 314549 32254489 ~ 32260203 (+)
G201308 LOC108430568,LOC107567795 non-coding downstream 375295 32315235 ~ 32323517 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other upstream 854868 31009926 ~ 31084633 (+)
G201018 NA other upstream 924456 31012711 ~ 31015045 (+)
lypla2 lypla2,lypa2 other upstream 2371426 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 2386617 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 3743303 28193574 ~ 28196198 (+)
G201207 NA other downstream 2262 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 113775 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 329358 32269298 ~ 32287803 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other downstream 983588 32923528 ~ 32927919 (+)
bud31 bud31,LOC107737741,LOC107720055 other downstream 1034380 32974320 ~ 32977910 (+)

Expression


Co-expression Network