G201289 (psmb2,LOC107591978,LOC107592948,LOC107688376)


Basic Information

Item Value
gene id G201289
gene name psmb2,LOC107591978,LOC107592948,LOC107688376
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 32217134 ~ 32228952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU273346
CACAAATGAGATAAAAACAAGCCACAACACAGTGTACTCTAACATGGGGTAATGTTTTAATTGAACATAAAAGATTCAGATCTGCAGTACAAAAGAGTGACATTGTGGAAAGGCAACAGTAGTTGATTACTTAAGCCCCCAAAGGAAGCTTCTCCAGGTCATGAATGCCGTCCTTGTCAATCAAGCGAACAGTGAAAGAGGGCAAGTTCAGGATGAAGCGCTTCTTGAGCTCTTCTACACACTTCTTCAGGAGCTCCACAGCCTCGTCCCGTGTCAGATCTGGTCTGTAGTATCTGTCCAGGATGGACAGAGTGAGGAAGGCTCCATATCCATGTGCAGCAAATGGGGCTTTTGCCAATGCTGAGAGATGATCCATATAATAGAGTCCAGGCCCATCAGACTCATCATAACCAGCCAGCAGCAGGTTCACGTGATACGGAGTCTGCAGGAGACAGGAAACAAGGGCTTTCAATGGAAATTCGatagaatatatttttgtgacttttgaaaatgtaaatgaaatgtaaacttaaaaatgtatacagagactaaatattgatatttaaaaagGAAGGTTAgtagtaaaacaaac
>TU273348
CACAAATGAGATAAAAACAAGCCACAACACAGTGTACTCTAACATGGGGTAATGTTTTAATTGAACATAAAAGATTCAGATCTGCAGTACAAAAGAGTGACATTGTGGAAAGGCAACAGTAGTTGATTACTTAAGCCCCCAAAGGAAGCTTCTCCAGGTCATGAATGCCGTCCTTGTCAATCAAGCGAACAGTGAAAGAGGGCAAGTTCAGGATGAAGCGCTTCTTGAGCTCTTCTACACACTTCTTCAGGAGCTCCACAGCCTCGTCCCGTGTCAGATCTGGTCTGTAGTATCTGTCCAGGATGGACAGAGTGAGGAAGGCTCCATATCCATGTGCAGCAAATGGGGCTTTTGCCAATGCTGAGAGATGATCCATATAATAGAGTCCAGGCCCATCAGACTCATCATAACCAGCCAGCAGCAGGTTCACGTGATACGGAGTCCGGCTGCGGAGATAGTCTGCTAGGTTCTTCCTGGTGAAATTTGCTGCAGCTGCTGGACTGAGCTCATACCcatttctcattttgtagAGCTGAACATTTTTCTGAATATACTCTGCAAACTGCACTGTATCTCCAGCTTCGCCGACACATAACAACAGGATCTTCTCACTTAGTTTGAACATTTTGTCGTAGTGTGTTTCATCTGGATGATGCTGCTGGCGGCCACATTATCAGCCGCAACCAGCACGAAATCCTGCCCCTGGATCCCCAGTAAATACTCCATCTCTCACAGCGAGCAGGGTTAGCTAAACTCAGCGCTGAATGCAGGCGGAATTACACAGCAGAAGTAGAAGAACAGCGGCGCGCGAGATTGTCGTCACCACACTGCATGAGCTGAAGCTGCAGTTGTCACGTGGTCACTCTATCAGACACAGCATGACCA
>TU273349
CACAAATGAGATAAAAACAAGCCACAACACAGTGTACTCTAACATGGGGTAATGTTTTAATTGAACATAAAAGATTCAGATCTGCAGTACAAAAGAGTGACATTGTGGAAAGGCAACAGTAGTTGATTACTTAAGCCCCCAAAGGAAGCTTCTCCAGGTCATGAATGCCGTCCTTGTCAATCAAGCGAACAGTGAAAGAGGGCAAGTTCAGGATGAAGCGCTTCTTGAGCTCTTCTACACACTTCTTCAGGAGCTCCACAGCCTCGTCCCGTGTCAGATCTGGTCTGTAGTATCTGTCCAGGATGGACAGAGTGAGGAAGGCTCCATATCCATGTGCAGCAAATGGGGCTTTTGCCAATGCTGAGAGATGATCCATATAATAGAGTCCAGGCCCATCAGACTCATCATAACCAGCCAGCAGCAGGTTCACGTGATACGGAGTCCGGCTGCGGAGATAGTCTGCTAGGTTCTTCCTGGTGAAATTTGCTGCAGCTGCTGGACTGAGCTCATACCcatttctcattttgtagAGCTGAACATTTTTCTGAATATACTCTGCAAACTGCACTGTATCTCCAGCTTCGCCGACACATAACAACAGGATCTTCTCACTTAGTTTGAACATTTTGTCGTAGTCGTTTCATCTGGATGATGCTGCTGGCGGCCACATTATCAGCCGCAACCAGCACGAAATCCTGCCCCTGGATCCCCAGTAAATACTCCATCTCTCACAGCGAGCAGGGTTAGCTAAACTCAGCGCTGAATGCAGGCGGAATTACACAGCAGAAGTAGAAGAACAGCGGCGCGCGAGATTGTCGTCACCACACTGCATGAGCTGAAGCTGCAGTTGTCACGTGGTCACTCTATCAGACACAGCATGACCA

Function

symbol description
psmb2 Predicted to enable peptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMB2 (proteasome 20S subunit beta 2).

NR:

description
proteasome subunit beta type-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU273346 False 592 lncRNA 0.41 3 32217134 32219273
TU273348 True 885 lncRNA 0.48 6 32217134 32228952
TU273349 False 884 lncRNA 0.48 6 32217134 32228952

Neighbor

gene id symbol gene type direction distance location
tfap2e tfap2e coding upstream 5204 32196215 ~ 32211930 (+)
ncdn NA coding upstream 23351 32187157 ~ 32193783 (+)
LOC103047171 ext1,ext1c,LOC107592945,LOC107706241,LOC107654729,LOC107688378,LOC107754264 coding upstream 36598 32071645 ~ 32180536 (+)
trnaq-cug_20 NA coding upstream 785159 31431904 ~ 31431975 (+)
trnaq-cug_19 NA coding upstream 785492 31431571 ~ 31431642 (+)
LOC103044735 LOC108430542,LOC107591984,LOC108257069,LOC107654683,LOC107592950,LOC107754258 coding downstream 63227 32292179 ~ 32295555 (+)
cdca8 cdca8 coding downstream 71422 32300374 ~ 32304369 (+)
prpsap2 prpsap2,LOC103393631 coding downstream 145565 32374517 ~ 32384819 (+)
epn2 epn2,LOC104959799 coding downstream 216668 32445620 ~ 32478713 (+)
LOC103038138 cacna1h,LOC108430574,LOC107703431,LOC106951959,LOC103151816,LOC102299227,LOC106914544 coding downstream 312775 32541727 ~ 32715442 (+)
G201281 LOC108430540,LOC102218321,LOC103154989,LOC108257141,LOC103371078,LOC103461361 non-coding upstream 30799 32181695 ~ 32186335 (+)
G201225 NA non-coding upstream 151427 32013078 ~ 32065707 (+)
G201206 NA non-coding upstream 277194 31939501 ~ 31939940 (+)
G201167 NA non-coding upstream 585381 31548349 ~ 31631753 (+)
G201163 NA non-coding upstream 765378 31441445 ~ 31451756 (+)
G201287 NA non-coding downstream 25537 32254489 ~ 32260203 (+)
G201308 LOC108430568,LOC107567795 non-coding downstream 86283 32315235 ~ 32323517 (+)
G201314 LOC108430568 non-coding downstream 101926 32330878 ~ 32360359 (+)
G201333 b9d1,LOC107674617,LOC107737762,LOC107654544 non-coding downstream 250492 32479444 ~ 32486333 (+)
G201393 NA non-coding downstream 258567 32487519 ~ 32487833 (+)
tpmt tpmt other upstream 149494 32053715 ~ 32067640 (+)
G201207 NA other upstream 230077 31942202 ~ 31987057 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other upstream 1132501 31009926 ~ 31084633 (+)
G201018 NA other upstream 1202089 31012711 ~ 31015045 (+)
eloa tceb3 other upstream 2664250 29542748 ~ 29552884 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 40346 32269298 ~ 32287803 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other downstream 694576 32923528 ~ 32927919 (+)
bud31 bud31,LOC107737741,LOC107720055 other downstream 745368 32974320 ~ 32977910 (+)
G201466 LOC102799139,LOC107581721 other downstream 1031221 33260173 ~ 33274907 (+)
psmg3 psmg3 other downstream 1582480 33811432 ~ 33814986 (+)

Expression


Co-expression Network