G201442 (znf598)


Basic Information

Item Value
gene id G201442
gene name znf598
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 32904382 ~ 32907017 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU273553
CCTTGCACATCACTCGGAGGTTTAGCTGCACTTCTACTGCTCCTCAACTCATCCGTGTCCATCTTCTCCTCCTTCATGCGTGGTTTCTGGTTGCCTCTCTCATGAGCATGTCTTCTCTCTTCCTGTCGGCGAAGAGCCTGCGAGGCCTGAAGAGCAGCAACCAGAtcccgatcctcctcctctCTAATATACCTCCAGCTTCTTACATTGTGTGATCCACCacgccctcctcctcctctcccagGCCGTGTCTGTCTGTTAAAACGATCTACTTCCTCATAGTCTTCTCCACCTACCATACCATCATTCCTCCTCTGCTGTCGGGGAGCGTAGTTGAACTGTATGTCGATCTGGCGGTTCTGCCGCGCCTCAGCCCGGCTCTTACTGTGGGCGGCAGCCTTGTGGGCCTTGTAGTCGATCTCTGTGCGAAAAGCATGCGTGAACTGTTCTGTGCTGCAGCGACCCTCCTCACACAGATAATGGCTCTCTCGGAAGTGCTCACTGAGGTATTGGTAGTcaCTGTAGTATTCCTGTGCCCCATCCGCATCACAGAAATGGCAGAAGAAGTGGTCTCGCCTTAAGTGCTTAAGCAGTTCGTCGTTATCCAGGTACCGATCATCACAGAATTTACAAAGCGGATGGCCACGATGAGAGGTGTCATCCGGGTCCCCTTGCGTCCGATGTCGAGCCAGGTCCTTACGATTATACCATTTCCTCTCATAGGCAAATATCTG

Function

symbol description
znf598 Predicted to enable ribosome binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein monoubiquitination and rescue of stalled ribosome. Predicted to act upstream of or within regulation of translation. Orthologous to human ZNF598 (zinc finger protein 598, E3 ubiquitin ligase).

NR:

description
PREDICTED: zinc finger protein 598

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU273553 True 734 lncRNA 0.53 4 32904382 32907017

Neighbor

gene id symbol gene type direction distance location
syngr3 syngr3,LOC107581789,LOC107703346,LOC107720048,LOC107674602,LOC107591648 coding upstream 13501 32884727 ~ 32890881 (+)
gfer gfer,LOC102797077 coding upstream 20220 32880440 ~ 32884162 (+)
ccdc97 NA coding upstream 175356 32720186 ~ 32729026 (+)
LOC103038138 cacna1h,LOC108430574,LOC107703431,LOC106951959,LOC103151816,LOC102299227,LOC106914544 coding upstream 188940 32541727 ~ 32715442 (+)
epn2 epn2,LOC104959799 coding upstream 425669 32445620 ~ 32478713 (+)
smcr8 smcr8 coding downstream 41164 32948181 ~ 32957634 (+)
cpsf4 cpsf4 coding downstream 71939 32978956 ~ 32985367 (+)
slc29a4 slc29a4,LOC108430547,LOC107720057,LOC107581724,LOC107737679,LOC107703421 coding downstream 99100 33006117 ~ 33032722 (+)
tnrc18 tnrc18 coding downstream 192429 33099446 ~ 33218836 (+)
LOC103025781 fscn1,fscn1a,LOC107581720,LOC107742378,LOC107674660,LOC107720060 coding downstream 427709 33334726 ~ 33348668 (+)
G201414 NA non-coding upstream 5627 32895178 ~ 32898755 (+)
G201409 NA non-coding upstream 173634 32729200 ~ 32730748 (+)
G201393 NA non-coding upstream 416549 32487519 ~ 32487833 (+)
G201333 b9d1,LOC107674617,LOC107737762,LOC107654544 non-coding upstream 418049 32479444 ~ 32486333 (+)
G201314 LOC108430568 non-coding upstream 544023 32330878 ~ 32360359 (+)
G201444 flii,LOC107703428,LOC107674686 non-coding downstream 8155 32915172 ~ 32923432 (+)
G201448 top3a,LOC107703423,LOC107737704,LOC107720051,LOC107592418 non-coding downstream 36768 32943785 ~ 32947042 (+)
G201451 shmt1,LOC107737723,LOC107703425,LOC107581728,LOC107674655 non-coding downstream 56394 32963411 ~ 32964559 (+)
G201453 NA non-coding downstream 62600 32969617 ~ 33055469 (+)
G201454 NA non-coding downstream 64269 32971286 ~ 32972726 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 616579 32269298 ~ 32287803 (+)
tpmt tpmt other upstream 836742 32053715 ~ 32067640 (+)
G201207 NA other upstream 917325 31942202 ~ 31987057 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other upstream 1819749 31009926 ~ 31084633 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other downstream 16511 32923528 ~ 32927919 (+)
bud31 bud31,LOC107737741,LOC107720055 other downstream 67303 32974320 ~ 32977910 (+)
G201466 LOC102799139,LOC107581721 other downstream 353156 33260173 ~ 33274907 (+)
psmg3 psmg3 other downstream 904415 33811432 ~ 33814986 (+)
LOC111195488 NA other downstream 2199021 35106038 ~ 35124618 (+)

Expression


Co-expression Network