bud31 (bud31,LOC107737741,LOC107720055)


Basic Information

Item Value
gene id bud31
gene name bud31,LOC107737741,LOC107720055
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 32974320 ~ 32977910 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU273578
CCTGTGTTCTCTTCTCTCACTGATATACAGACAGGCACCGTCGGGGACACCTAACCCCGCTAACCTGATGCAATAGAGCAGAATCCTGAGCAACAGTCAGCTAACACGAGATAACTACTCATTTATTCGCGTTTTAAAGGTGGGTTTAAGGTGGTAGTGTTTGTGTTCATGGGGTCAGACTCGAATAGAACTGATGGTGAGGGTGTTTAGGATAATCTGGTAGGATTTGGGGGAAGGACAGCTCGATTACGCGTATTTTTGAGCCATCCTGCTGCAGGCAGGCCCCCCTCACTCAGTGACGCCGATTCAGAGAGACGgtagctaggctaggctagttTGGGCTGAGTGTGCTGTACTGTGTTTCCCTGCCGAAACAGCCCAcgtctctcttttttgtttttttttctctatttctgtttaatttaacattaatttaaagcCATGCCCAAAGTGAAGAGGAGTAGGAAGCCTCCACCAGACGGCTGGGAGCTGATTGAGCCGACTTTAGACGAGCTGGATCAGAAAATGAGGGAAGCTGAAACTGAGCCTCATGAGGGAAAACGTAAAGTGGAGTCTCTGTGGCCGATTTTCAGACTTCACCACCAGCGGAGCCGCTATATCTTCGACCTGTTCTACAAAAGAAAGGCCATCAGTAGAGagctgtatgaataCTGCATAAGAGAGGGATACGCCGACAAAAACCTCATAGCAAAGTGGAAGAAACAGGGCTACGAAAACCTCTGCTGCCTTCGCTGCATTCAGACACGTGACACCAACTTCGGCACAAACTGCATATGTCGAGTTCCTAAAGGAAAACTCGAAGTGGGTCGGATCATTGAGTGCACTCACTGTGGGTGCAGAGGATGCTCCGGATAATCAAGGGCTTGTATTTCATTTCTGGGGTGTTGGGGCTCAAAACATtttgatttctttgattttaaaagtgtcTGCTTGCTTTCATTCCGGATTGTCTGTAAGTGAATGTAGAAATGTTCAtcatttgtgtattttgtgaaaatgtcatttttattcaaattaccttcaaaaacctttaaaatgt
>TU273580
ACCTAACCCCGCTAACCTGATGCAATAGAGCAGAATCCTGAGCAACAGTCAGCTAACACGAGATAACTACTCATTTATTCGCGTTTTAAAGGTGGGTTTAAGGTGGTAGTGTTTGTGTTCATGGGGTCAGACTCGAATAGAACTGATGGTGAGGGTGTTTAGGATAATCTGGTAGGATTTGGGGGAAGGACAGCTCGATTACGCGTATTTTTGAGCCATCCTGCTGCAGGCAGGCCCCCCTCACTCAGTGACGCCGATTCAGAGAGACGgtagctaggctaggctagttTGGGCTGAGTGTGCTGTACTGTGTTTCCCTGCCGAAACAGCCCAcgtctctcttttttgtttttttttctctatttctgtttaatttaacattaatttaaagcCATGCCCAAAGTGAAGAGGAGTAGGAAGCCTCCACCAGACGGCTGGGAGCTGATTGAGCCGACTTTAGACGAGCTGGATCAGAAAATGAGGGAAGCTGAAACTGAGCCTCATGAGGGAAAACGTAAAGTGGAGTCTCTGTGGCCGATTTTCAGACTTCACCACCAGCGGAGCCGCTATATCTTCGACCTGTTCTACAAAAGAAAGGCCATCAGTAGAGagctgtatgaataCTGCATAAGAGAGGGATACGCCGACAAAAACCTCATAGCAAAGTGGAAGAAACAGGGCTACGAAAACCTCTGCTGCCTTCGCTGCATTCAGACACGTGACACCAACTTCGGCACAAACTGCATATGTCGAGTTCCTAAAGGAAAACTCGAAGTGGGTCGGATCATTGAGTGCACTCACTGTGGGTGCAGAGGATGCTCCGGATAATCAAGGGCTTGTATTTCATTTCTGGGGTGTTGGGGCTCAAAACATtttgatttctttgattttaaaagtgtcTGCTTGCTTTCATTCCGGATTGTCTGTAAGTGAATGTAGAAATGTTCAtcatttgtgtattttgtgaaaatgtcatttttattcaaattaccttcaaaaacctttaaaatgt
>XM_022683368.1
CGGGGACACCTAACCCCGCTAACCTGATGCAATAGAGCAGAATCCTGAGCAACAGTCAGCTAACACGAGATAACTACTCATTTATTCGCGTTTTAAAGGTGGGTTTAAGGTGGTAGTGTTTGTGTTCATGGGGTCAGACTCGAATAGAACTGATGGTGAGGGTGTTTAGGATAATCTGGTAGGATTTGGGGGAAGGACAGCTCGATTACGCGTATTTTTGAGCCATCCTGCTGCAGGCAGGCCCCCCTCACTCAGTGACGCCGATTCAGAGAGACGgtagctaggctaggctagttTGGGCTGAGTGTGCTGTACTGTGTTTCCCTGCCGAAACAGCCCAcgtctctcttttttgtttttttttctctatttctgtttaatttaacattaatttaaagcCATGCCCAAAGTGAAGAGGAGTAGGAAGCCTCCACCAGACGGCTGGGAGCTGATTGAGCCGACTTTAGACGAGCTGGATCAGAAAATGAGGGAAGCTGAAACTGAGCCTCATGAGGGAAAACGTAAAGTGGAGTCTCTGTGGCCGATTTTCAGACTTCACCACCAGCGGAGCCGCTATATCTTCGACCTGTTCTACAAAAGAAAGGCCATCAGTAGAGagctgtatgaataCTGCATAAGAGAGGGATACGCCGACAAAAACCTCATAGCAAAGTGGAAGAAACAGGGCTACGAAAACCTCTGCTGCCTTCGCTGCATTCAGACACGTGACACCAACTTCGGCACAAACTGCATATGTCGAGTTCCTAAAGGAAAACTCGAAGTGGGTCGGATCATTGAGTGCACTCACTGTGGGTGCAGAGGATGCTCCGGATAATCAAGGGCTTGTATTTCATTTCTGGGGTGTTGGGGCTCAAAACATtttgatttctttgattttaaaagtgtcTGCTTGCTTTCATTCCGGATTGTCTGTAAGTGAATGTAGAAATGTTCAtcatttgtgtattttgtgaaaatgtcatttttattcaaattaccttcaaaaacctttaaaatgtgctctttactttgttcattttgtaaaataaaatccttgttgtaaa

Function

symbol description
bud31 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human BUD31 (BUD31 homolog).

NR:

description
PREDICTED: protein BUD31 homolog

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K12873 BUD31, G10; bud site selection protein 31

RNA

RNA id representative length rna type GC content exon number start site end site
TU273578 False 1060 TUCP 0.45 4 32974320 32977865
TU273580 False 1012 TUCP 0.45 4 32974368 32977865
XM_022683368.1 True 1064 mRNA 0.44 4 32974361 32977910

Neighbor

gene id symbol gene type direction distance location
smcr8 smcr8 coding upstream 16686 32948181 ~ 32957634 (+)
syngr3 syngr3,LOC107581789,LOC107703346,LOC107720048,LOC107674602,LOC107591648 coding upstream 83439 32884727 ~ 32890881 (+)
gfer gfer,LOC102797077 coding upstream 90158 32880440 ~ 32884162 (+)
ccdc97 NA coding upstream 245294 32720186 ~ 32729026 (+)
LOC103038138 cacna1h,LOC108430574,LOC107703431,LOC106951959,LOC103151816,LOC102299227,LOC106914544 coding upstream 258878 32541727 ~ 32715442 (+)
cpsf4 cpsf4 coding downstream 1046 32978956 ~ 32985367 (+)
slc29a4 slc29a4,LOC108430547,LOC107720057,LOC107581724,LOC107737679,LOC107703421 coding downstream 28207 33006117 ~ 33032722 (+)
tnrc18 tnrc18 coding downstream 121536 33099446 ~ 33218836 (+)
LOC103025781 fscn1,fscn1a,LOC107581720,LOC107742378,LOC107674660,LOC107720060 coding downstream 356816 33334726 ~ 33348668 (+)
tmem184a tmem184a,LOC107581701,LOC107745595,LOC107674661 coding downstream 839621 33817531 ~ 33884645 (+)
G201454 NA non-coding upstream 1594 32971286 ~ 32972726 (+)
G201451 shmt1,LOC107737723,LOC107703425,LOC107581728,LOC107674655 non-coding upstream 9761 32963411 ~ 32964559 (+)
G201448 top3a,LOC107703423,LOC107737704,LOC107720051,LOC107592418 non-coding upstream 27278 32943785 ~ 32947042 (+)
G201444 flii,LOC107703428,LOC107674686 non-coding upstream 50888 32915172 ~ 32923432 (+)
G201442 znf598 non-coding upstream 67303 32904382 ~ 32907017 (+)
G201457 atp5j2,LOC107720056,LOC107591715,LOC107703422,LOC107737688,LOC107674607,LOC107578700 non-coding downstream 9235 32987145 ~ 32987971 (+)
G201477 NA non-coding downstream 345697 33323607 ~ 33323979 (+)
G201480 NA non-coding downstream 385137 33363047 ~ 33363322 (+)
G201485 rnf216 non-coding downstream 421393 33399303 ~ 33412286 (+)
G201606 NA non-coding downstream 446801 33424711 ~ 33424912 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 46401 32923528 ~ 32927919 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 686517 32269298 ~ 32287803 (+)
tpmt tpmt other upstream 906680 32053715 ~ 32067640 (+)
G201207 NA other upstream 987263 31942202 ~ 31987057 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other upstream 1889687 31009926 ~ 31084633 (+)
G201466 LOC102799139,LOC107581721 other downstream 282263 33260173 ~ 33274907 (+)
psmg3 psmg3 other downstream 833522 33811432 ~ 33814986 (+)
LOC111195488 NA other downstream 2128128 35106038 ~ 35124618 (+)
G202336 NA other downstream 3611538 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 4005413 36983323 ~ 36993332 (+)

Expression


Co-expression Network