G201480


Basic Information

Item Value
gene id G201480
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 33363047 ~ 33363322 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU273633
gtttcatggctaaatagagcagcctggtgttcaatctttcaaaattaattacacattgcaccaataagagcagagtgtgaaggttcaattagcagggtaagagcacttttttttcacagttttgctcaaaatattgcaatgcacacaacattatgggtgacataccagagttcagaagaggacaaattgttggtgcacgtctttctGGTGcctctgtgaccaagacagcaagtctttgtgatgtatcaagagccacagtatctagggtaatgtcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU273633 True 276 lncRNA 0.41 1 33363047 33363322

Neighbor

gene id symbol gene type direction distance location
LOC103025781 fscn1,fscn1a,LOC107581720,LOC107742378,LOC107674660,LOC107720060 coding upstream 14379 33334726 ~ 33348668 (+)
tnrc18 tnrc18 coding upstream 144211 33099446 ~ 33218836 (+)
slc29a4 slc29a4,LOC108430547,LOC107720057,LOC107581724,LOC107737679,LOC107703421 coding upstream 330325 33006117 ~ 33032722 (+)
cpsf4 cpsf4 coding upstream 377680 32978956 ~ 32985367 (+)
smcr8 smcr8 coding upstream 405413 32948181 ~ 32957634 (+)
tmem184a tmem184a,LOC107581701,LOC107745595,LOC107674661 coding downstream 454209 33817531 ~ 33884645 (+)
ints1 ints1,LOC107703394,LOC107572041 coding downstream 576112 33939434 ~ 33998741 (+)
LOC103027444 NA coding downstream 652380 34015702 ~ 34024202 (+)
micall2 micall2,micall2a coding downstream 671178 34034500 ~ 34076513 (+)
LOC103025280 LOC108430595,LOC108256942,LOC105899944 coding downstream 843530 34206852 ~ 34244019 (+)
G201477 NA non-coding upstream 39068 33323607 ~ 33323979 (+)
G201453 NA non-coding upstream 307578 32969617 ~ 33055469 (+)
G201457 atp5j2,LOC107720056,LOC107591715,LOC107703422,LOC107737688,LOC107674607,LOC107578700 non-coding upstream 375076 32987145 ~ 32987971 (+)
G201454 NA non-coding upstream 390321 32971286 ~ 32972726 (+)
G201451 shmt1,LOC107737723,LOC107703425,LOC107581728,LOC107674655 non-coding upstream 398488 32963411 ~ 32964559 (+)
G201485 rnf216 non-coding downstream 35981 33399303 ~ 33412286 (+)
G201606 NA non-coding downstream 61389 33424711 ~ 33424912 (+)
G201608 NA non-coding downstream 64136 33427458 ~ 33427671 (+)
G201609 NA non-coding downstream 64524 33427846 ~ 33429381 (+)
G201615 NA non-coding downstream 83823 33447145 ~ 33447383 (+)
G201466 LOC102799139,LOC107581721 other upstream 88140 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 385137 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 435128 32923528 ~ 32927919 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 1075244 32269298 ~ 32287803 (+)
tpmt tpmt other upstream 1295407 32053715 ~ 32067640 (+)
psmg3 psmg3 other downstream 448110 33811432 ~ 33814986 (+)
LOC111195488 NA other downstream 1742716 35106038 ~ 35124618 (+)
G202336 NA other downstream 3226126 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 3620001 36983323 ~ 36993332 (+)

Expression


Co-expression Network