G201609


Basic Information

Item Value
gene id G201609
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 33427846 ~ 33429381 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU273799
TAGACCTGTCATAATAATTACGTTGTCATGCTTTTGTACAATATTCAGACAAATGGCTGCCTTTAGTATTGCCTATTGTGTTTACTTTACAGAGGAGGACCCATGAACATGAATAAGAATGTATGttgactttcttttaaagcagtggttttattttatttactattttagaaaacaaaatggtattaaaattaaaatattatcatttatcacaattaaaacacaataaaaactaataaaaacaggtGATCTTGACAGGCCTACCAATATAGGTAccctttaaataaagtgttacttcAATGTTTTACAAGACTGAGCAATACAagtaaaaataatcacaaaacAATAGAGATGATTCTCTCGTACACTGCCTTATAAAATAGTCTCTAGAACAGACCACAGAACATCTACACAAAGAAAATCCTACTAAAACATTCTTTTAACATTGTAATTTAGATTTTGTGACTTTGTAAAAACAGCAATACAACAGCAGTAAGGGTTCAGTTAAAGCAAGAGCAAATAAACAGTCTACACCTACTCATATCGTTTTGTATCTCTGGCTTAATTGAAAGCACACATTACAGCACAGTTTGGCAGCAGTTTTCAAAAAGCAATGGAAAGTGATTAGAGGTTAATTAGCTGGGCTGAATCACCACTGtcaccaccccaccccacctccTCCATCAGCAACTTAATAAAGCgaattaatttaacatttgAGACTGATGAGCAAAACATGTGTTCAGACTCAGCCCTTGGTATTCCCGTCAGAATTCCcgcttgtgtttgtgtttccatGTGTTAAAAGCTGAGGCTATAATCACTGGCAATCTTTAAAATGTGTACAGCACTCAGTTCACATTTTAACCACTACCCTGCTACAAATCTGGTTCAGGTTTCAGATGATTAAGGTGgctgagaagctggtcatccagaTAAAACATACCCTATATAGATAAAGCAAAGTCGAGCTTGGtatttgtggggtttttttatagcttggtcaggttgatcACACTTATAGACCATCTAAACTTTCAAACTGAAACCTAAACATACCCTACAgtatactaggggtgtgccatatcatacataataatattgccaacatttttaaatatgttgtgaATAATATTATACtctaaaatattgtggtatattatcacccacccctatttatcacatcagggtactacttttttttttgctgtttttagcaaaagaaaaattcacactgttctcatttcgcattatatatctactagagacaggttatgatatctgtccagtatcatttattttactttaatcctggatatatggagatatttgaagtgcattattagtatcaggaCATTCTGGATTTCTGgaacattgacttctgttaaaaatctgataaaattcttaattagtctttttttaatatctcagtaaggggtgtgccatatcatattgtatacaataataacattttattttcattttgttgcagtactgtatttttgaaataggtttttttttgtaattcagtgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU273799 True 1536 lncRNA 0.33 1 33427846 33429381

Neighbor

gene id symbol gene type direction distance location
LOC103025781 fscn1,fscn1a,LOC107581720,LOC107742378,LOC107674660,LOC107720060 coding upstream 79178 33334726 ~ 33348668 (+)
tnrc18 tnrc18 coding upstream 209010 33099446 ~ 33218836 (+)
slc29a4 slc29a4,LOC108430547,LOC107720057,LOC107581724,LOC107737679,LOC107703421 coding upstream 395124 33006117 ~ 33032722 (+)
cpsf4 cpsf4 coding upstream 442479 32978956 ~ 32985367 (+)
smcr8 smcr8 coding upstream 470212 32948181 ~ 32957634 (+)
tmem184a tmem184a,LOC107581701,LOC107745595,LOC107674661 coding downstream 388150 33817531 ~ 33884645 (+)
ints1 ints1,LOC107703394,LOC107572041 coding downstream 510053 33939434 ~ 33998741 (+)
LOC103027444 NA coding downstream 586321 34015702 ~ 34024202 (+)
micall2 micall2,micall2a coding downstream 605119 34034500 ~ 34076513 (+)
LOC103025280 LOC108430595,LOC108256942,LOC105899944 coding downstream 777471 34206852 ~ 34244019 (+)
G201608 NA non-coding upstream 175 33427458 ~ 33427671 (+)
G201606 NA non-coding upstream 2934 33424711 ~ 33424912 (+)
G201485 rnf216 non-coding upstream 15560 33399303 ~ 33412286 (+)
G201480 NA non-coding upstream 64524 33363047 ~ 33363322 (+)
G201477 NA non-coding upstream 103867 33323607 ~ 33323979 (+)
G201615 NA non-coding downstream 17764 33447145 ~ 33447383 (+)
G201621 NA non-coding downstream 57617 33486998 ~ 33487376 (+)
G201623 NA non-coding downstream 59053 33488434 ~ 33488663 (+)
G201632 NA non-coding downstream 72125 33501506 ~ 33502030 (+)
G201670 NA non-coding downstream 134581 33563962 ~ 33564176 (+)
G201466 LOC102799139,LOC107581721 other upstream 152939 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 449936 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 499927 32923528 ~ 32927919 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 1140043 32269298 ~ 32287803 (+)
tpmt tpmt other upstream 1360206 32053715 ~ 32067640 (+)
psmg3 psmg3 other downstream 382051 33811432 ~ 33814986 (+)
LOC111195488 NA other downstream 1676657 35106038 ~ 35124618 (+)
G202336 NA other downstream 3160067 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 3553942 36983323 ~ 36993332 (+)

Expression


Co-expression Network