G201725


Basic Information

Item Value
gene id G201725
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 33871849 ~ 33872537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU273921
tagcatcacCACAGAAACTATAGCAACaccttggcaaccacctagcagccacTTACCGACACCATGGCAAAACCTTAGCTACCACCTAcaaaaaccttagcaaccacctagcaacaccataacaaccactatggataccatagcaaccacttagcaactgcttagcaacacctttgcaaccgcTTAGTACTCgcttagcaataccatagcaaccagccac

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU273921 True 220 lncRNA 0.47 2 33871849 33872537

Neighbor

gene id symbol gene type direction distance location
LOC103025781 fscn1,fscn1a,LOC107581720,LOC107742378,LOC107674660,LOC107720060 coding upstream 523181 33334726 ~ 33348668 (+)
tnrc18 tnrc18 coding upstream 653013 33099446 ~ 33218836 (+)
slc29a4 slc29a4,LOC108430547,LOC107720057,LOC107581724,LOC107737679,LOC107703421 coding upstream 839127 33006117 ~ 33032722 (+)
cpsf4 cpsf4 coding upstream 886482 32978956 ~ 32985367 (+)
smcr8 smcr8 coding upstream 914215 32948181 ~ 32957634 (+)
ints1 ints1,LOC107703394,LOC107572041 coding downstream 66897 33939434 ~ 33998741 (+)
LOC103027444 NA coding downstream 143165 34015702 ~ 34024202 (+)
micall2 micall2,micall2a coding downstream 161963 34034500 ~ 34076513 (+)
LOC103025280 LOC108430595,LOC108256942,LOC105899944 coding downstream 334315 34206852 ~ 34244019 (+)
arpc1a arpc1a,LOC107674705,LOC107591778,LOC107720063,LOC107703414 coding downstream 373615 34246152 ~ 34256116 (+)
G201708 NA non-coding upstream 166969 33704346 ~ 33704880 (+)
G201704 NA non-coding upstream 201558 33670082 ~ 33670291 (+)
G201699 NA non-coding upstream 213258 33658345 ~ 33658591 (+)
G201696 NA non-coding upstream 261498 33609896 ~ 33610351 (+)
G201694 NA non-coding upstream 265068 33606390 ~ 33606781 (+)
G201786 NA non-coding downstream 151785 34024322 ~ 34025453 (+)
G201800 NA non-coding downstream 206004 34078541 ~ 34078751 (+)
G201805 LOC107720062,LOC107581717,LOC107591759,LOC107674676 non-coding downstream 288908 34161445 ~ 34194241 (+)
G201830 NA non-coding downstream 435438 34307975 ~ 34309433 (+)
G201851 NA non-coding downstream 529060 34401597 ~ 34401908 (+)
psmg3 psmg3 other upstream 56863 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 596942 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 893939 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 943930 32923528 ~ 32927919 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 1584046 32269298 ~ 32287803 (+)
LOC111195488 NA other downstream 1233501 35106038 ~ 35124618 (+)
G202336 NA other downstream 2716911 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 3110786 36983323 ~ 36993332 (+)

Expression


Co-expression Network