G201872


Basic Information

Item Value
gene id G201872
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 34470306 ~ 34547849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU274108
aaactatTTACACGCTACACTGGTAGGAGTTAACGGTGGATTGGCAGCTACCACCACAAATGCTAATACTCAGCTCAATAAACTCCCGTCGGCATACCAGCCACGCTCAACCAGCCCCCCAATAGTGTACCCGCCTGCCTTTAAATACCTTTAGCCCATCCCCGGCTAAACCAACAAGTAATTAACTTGAGGGCAGGTGGGTAAGACAACTATACATGATTGTATATGtacaatattaacatatttacaaacAGAATGACATGCATGTAAACATTTGGACGTCCAGGTAAGTATTGACGAtaattttacattgttaatgtattattttctctgttctctttttcACAGGTACCCCCAGGCTCCCCTGCCCCAGGACACCCCTTGGTCTCTACCCAGACCTTAAGGACCCGGGTGGCTCGCGCGCCGCCATTTCCACAGGATCCAGATTTATCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274108 True 455 lncRNA 0.45 2 34470306 34547849

Neighbor

gene id symbol gene type direction distance location
mmd2 mmd2,mmd2a,LOC107748164,LOC107674702,LOC107720066,LOC107581716 coding upstream 148447 34286087 ~ 34321859 (+)
arpc1b arpc1b,LOC107720102,LOC107591785,LOC107674599,LOC107581715 coding upstream 198975 34256564 ~ 34271331 (+)
arpc1a arpc1a,LOC107674705,LOC107591778,LOC107720063,LOC107703414 coding upstream 214190 34246152 ~ 34256116 (+)
LOC103025280 LOC108430595,LOC108256942,LOC105899944 coding upstream 226287 34206852 ~ 34244019 (+)
micall2 micall2,micall2a coding upstream 393793 34034500 ~ 34076513 (+)
card11 card11,LOC107592484 coding downstream 596426 35144275 ~ 35237634 (+)
gna12 gna12,gna12a,LOC107674729,LOC107758336,LOC107703403,LOC107753491 coding downstream 715221 35263070 ~ 35336079 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding downstream 808904 35356753 ~ 35372601 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding downstream 829802 35377651 ~ 35386085 (+)
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding downstream 1053752 35601601 ~ 35615811 (+)
G201859 NA non-coding upstream 34213 34434041 ~ 34436093 (+)
G201824 LOC108257387 non-coding upstream 47981 34405621 ~ 34422325 (+)
G201851 NA non-coding upstream 68398 34401597 ~ 34401908 (+)
G201830 NA non-coding upstream 160873 34307975 ~ 34309433 (+)
G201805 LOC107720062,LOC107581717,LOC107591759,LOC107674676 non-coding upstream 276065 34161445 ~ 34194241 (+)
G201884 NA non-coding downstream 223681 34771530 ~ 34819661 (+)
G201887 NA non-coding downstream 274998 34822847 ~ 34828522 (+)
G201888 NA non-coding downstream 275923 34823772 ~ 34913984 (+)
G201892 NA non-coding downstream 283212 34831061 ~ 34853228 (+)
G201902 NA non-coding downstream 480051 35027900 ~ 35028205 (+)
psmg3 psmg3 other upstream 655320 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 1195399 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 1492396 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 1542387 32923528 ~ 32927919 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 2182503 32269298 ~ 32287803 (+)
LOC111195488 NA other downstream 558189 35106038 ~ 35124618 (+)
G202336 NA other downstream 2041599 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 2435474 36983323 ~ 36993332 (+)

Expression


Co-expression Network