G202163


Basic Information

Item Value
gene id G202163
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 35651071 ~ 35680201 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU274453
AGTTAATGTACTTTAATCTGAAAACACTGAGTTCAAGCTCAATAAAACCACAGGTTTAACATGTACAGATTTTTTAGTAAatgcaaaaaagtaaaataataaaacaaagtcAAAGAAGGAATTCTACAGTGAAGTTTTATCAAAACAATTCAATGAGCTACCAAACTCATTTATTCACTTGAGACAAAAGATCATCTTTTGTGCTTACTAATCATCCTAAAAACCTGCCAAAGActagaaattgaaaaaaaaaaaagttaaaaataaaatgagatgaGAAGTGAGACAGTTCGCACTATGGTATTGCAAATTCAATGTCCTTGACACTTGAagccattttttattcattttgcatCTTTTCGtattatatatggtatatacaTTGGTCGGTATAGCAATACGATATTAAGAGTATGCTGATgtagaaacagaaacaaaaaacaaaaaatatatattgcctCACTAACAAATGGTCATTCACATAGAAAAACGAAAAAAGTACAATTCGTAAAACATTGGGCTCATGTTCACAGGTGAGTAGTTTGGTCGCTCAGGCCAGGCAGAGCTGTGTGAATGTACAAAAAAGGCCCATTTAAAAgatgtgaaacatttaaaagattACGAGGAAGAAGAGTCGAAGAGTCATGGTTTGGTTGTTGGCACAGTCGAGGAACCTCGCCTCGGTGTTTGATCGCGATAAAAGCATCCATCAAGAAACCCAATGCAAGCATCAGTAGCACACGAGAACACTTCACACTCCACATTGAAAGGTCACCATGCCTCAGAGAAGGAAATCAACGAAGGTCACACAGTCCAGAAAGCGAGATGTTCAGGTTAGGAGATAATGACACAATTAACCCAGGCTTTTTTTCCTTAAGAAGTCTTTAAGTTCGAGTCCTATATTTTCCCTTTGACAGTTTTCCCTATTAACATGTTCTCTCCTGAGGAACCACAACCTCAGGACCTCCAGGAACATTAgctttgttagctctgctagcTTTGTCTTTTCACAATATGCACACCACACTGCTGTTGAAACTGCAGTTCTGGGATTCTTGGGAAGTAAATTCAAGGCAGCTTGGATGGCGATGGTCTGTAGCAGGGACTACTTATTGGATTTGTTCAGTTCTTGCTCACTGCTGGAGATCGCCATCCTAGCTGCCTTCATCAGTGTGAGGCTAGAGCAGGGCAGAGGAGAGATATAGACTAGTGCAGTGGTTCTTAAGCTGGTGGTATGCATAGCATCCCGAAGTATTAAATCTGTATTTAAGCCCAAACTTCAGATTTTCACTCTTGTAACTACAGTTCTGTACTTGCTTTTAACAGTTTCATAGGCCCTGTCGAATGGTACAATTCACAATATTTCTGCTTCAGAATTAATAGCTAAATAGCCAATGGTTCAAGAGGATGCAATGTAGACACTGTATTTCACTACAATGTCTCACAATTGTCTCAAGCTTTCTGAGAGGTACACAGCATTGACCAGGAAAACATGGAAGCTTTATTCTTTGAACACGGGTGGTACTtggtttttaaaaacattgagaACCACTGTGCTAGTGCCTCCTATAGCATTATGTGTGTGCATAATTGTGTATGGGACCTCTTCTGGGGTCTTCTGAAGGGTTGGCGCTCACTTCCTATATTTTACATATGGCACGTTCTCCTTGGACCAGATGTTGTCTGGTCTGAGGATTGCAACCAGAAGTTCATctgtatatgaatatatatgtaaagagcATGTCGGAAATAGAAGGGCTGATCCAGGAAAAGATACGGTCAAGAAATGGCATAATAATTACTACTACTAGATAGATGCGACCTTGGCGATCCAAGGTTCCAAAATCTCCAAGATCTGTACTCCTTCAAGGTTTGGACCATGATCTTATGCAATGGTGCCCTGGTGTTGTGGAGAGCTTGCTTGCTTTGTGGGCCTGGAGATATTGGATAGTTGACGTGTTTTTTCACCTCCTTGAGTCCATACTGCTTCACAGAGGAGGAAAGAAATCCAAACCTGGACAGCATAGAGTCTTTACGTCTGTGTCCAAGCTTACTCAGCAGTCTGTGAGTCTGGCCTTCAGTTCATAGTtggtgtacagtacagtacagagtaGTTCTCAAGTACGcttcattgtttaatattcttttttttttctttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274453 True 2161 lncRNA 0.39 2 35651071 35680201

Neighbor

gene id symbol gene type direction distance location
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding upstream 35260 35601601 ~ 35615811 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding upstream 264986 35377651 ~ 35386085 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding upstream 278470 35356753 ~ 35372601 (+)
gna12 gna12,gna12a,LOC107674729,LOC107758336,LOC107703403,LOC107753491 coding upstream 314992 35263070 ~ 35336079 (+)
card11 card11,LOC107592484 coding upstream 413437 35144275 ~ 35237634 (+)
snx8 snx8,LOC107758331,LOC107592787 coding downstream 94827 35775028 ~ 35799000 (+)
mrm2 mrm2 coding downstream 130836 35811037 ~ 35818586 (+)
zfand2a zfand2a,LOC107568938 coding downstream 886006 36566207 ~ 36580371 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding downstream 971633 36651834 ~ 36677922 (+)
trnat-cgu_1 NA coding downstream 1197622 36877823 ~ 36877894 (+)
G202149 NA non-coding upstream 128301 35522542 ~ 35522770 (+)
G202147 NA non-coding upstream 140159 35510703 ~ 35510912 (+)
G202127 NA non-coding upstream 209510 35441286 ~ 35441561 (+)
G202086 NA non-coding upstream 237282 35413557 ~ 35413789 (+)
G202081 NA non-coding upstream 245219 35405618 ~ 35405852 (+)
G202171 NA non-coding downstream 93098 35773299 ~ 35773919 (+)
G202174 NA non-coding downstream 114059 35794260 ~ 35795143 (+)
G202175 nudt1,LOC107592807,LOC107674605,LOC107758325 non-coding downstream 125363 35805564 ~ 35809425 (+)
G202178 NA non-coding downstream 139213 35819414 ~ 35820135 (+)
G202208 NA non-coding downstream 151236 35831437 ~ 35898406 (+)
LOC111195488 NA other upstream 526453 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 1836085 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 2376164 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 2673161 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 2723152 32923528 ~ 32927919 (+)
G202336 NA other downstream 909247 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 1303122 36983323 ~ 36993332 (+)

Expression


Co-expression Network